SILENT_MODE BLOCK_FILE jp_OWoaWdA.concise.blc MAX_NSEQ 256 MAX_INPUT_LEN 258 OUTPUT_FILE jp_OWoaWdA.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 133 245 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 246 133 255 H SPACE SUB_CHARS 1 246 133 255 E SPACE SUB_CHARS 1 246 133 255 - SPACE STRAND 5 249 13 COLOUR_TEXT_REGION 5 249 13 249 51 STRAND 29 249 39 COLOUR_TEXT_REGION 29 249 39 249 51 STRAND 42 249 54 COLOUR_TEXT_REGION 42 249 54 249 51 STRAND 60 249 72 COLOUR_TEXT_REGION 60 249 72 249 51 STRAND 76 249 87 COLOUR_TEXT_REGION 76 249 87 249 51 STRAND 92 249 100 COLOUR_TEXT_REGION 92 249 100 249 51 STRAND 107 249 118 COLOUR_TEXT_REGION 107 249 118 249 51 STRAND 124 249 130 COLOUR_TEXT_REGION 124 249 130 249 51 STRAND 5 254 13 COLOUR_TEXT_REGION 5 254 13 254 51 STRAND 29 254 39 COLOUR_TEXT_REGION 29 254 39 254 51 STRAND 42 254 54 COLOUR_TEXT_REGION 42 254 54 254 51 STRAND 61 254 72 COLOUR_TEXT_REGION 61 254 72 254 51 STRAND 76 254 86 COLOUR_TEXT_REGION 76 254 86 254 51 STRAND 92 254 100 COLOUR_TEXT_REGION 92 254 100 254 51 STRAND 107 254 118 COLOUR_TEXT_REGION 107 254 118 254 51 STRAND 124 254 130 COLOUR_TEXT_REGION 124 254 130 254 51 STRAND 5 255 12 COLOUR_TEXT_REGION 5 255 12 255 51 STRAND 29 255 40 COLOUR_TEXT_REGION 29 255 40 255 51 STRAND 42 255 54 COLOUR_TEXT_REGION 42 255 54 255 51 STRAND 60 255 72 COLOUR_TEXT_REGION 60 255 72 255 51 STRAND 77 255 87 COLOUR_TEXT_REGION 77 255 87 255 51 STRAND 93 255 100 COLOUR_TEXT_REGION 93 255 100 255 51 STRAND 107 255 119 COLOUR_TEXT_REGION 107 255 119 255 51 STRAND 124 255 130 COLOUR_TEXT_REGION 124 255 130 255 51