SILENT_MODE
BLOCK_FILE jp_CprlGnQ.concise.blc
MAX_NSEQ 806
MAX_INPUT_LEN 808
OUTPUT_FILE jp_CprlGnQ.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 83 795   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 796 83 805 H SPACE
SUB_CHARS 1 796 83 805 E SPACE
SUB_CHARS 1 796 83 805 - SPACE
STRAND 4 799 12
COLOUR_TEXT_REGION 4 799 12 799 51
STRAND 19 799 24
COLOUR_TEXT_REGION 19 799 24 799 51
STRAND 38 799 46
COLOUR_TEXT_REGION 38 799 46 799 51
STRAND 54 799 59
COLOUR_TEXT_REGION 54 799 59 799 51
STRAND 73 799 79
COLOUR_TEXT_REGION 73 799 79 799 51
STRAND 4 804 12
COLOUR_TEXT_REGION 4 804 12 804 51
STRAND 19 804 24
COLOUR_TEXT_REGION 19 804 24 804 51
STRAND 34 804 45
COLOUR_TEXT_REGION 34 804 45 804 51
STRAND 54 804 59
COLOUR_TEXT_REGION 54 804 59 804 51
STRAND 73 804 80
COLOUR_TEXT_REGION 73 804 80 804 51
STRAND 4 805 14
COLOUR_TEXT_REGION 4 805 14 805 51
STRAND 19 805 25
COLOUR_TEXT_REGION 19 805 25 805 51
STRAND 28 805 28
COLOUR_TEXT_REGION 28 805 28 805 51
STRAND 39 805 46
COLOUR_TEXT_REGION 39 805 46 805 51
STRAND 54 805 58
COLOUR_TEXT_REGION 54 805 58 805 51
STRAND 72 805 79
COLOUR_TEXT_REGION 72 805 79 805 51