SILENT_MODE
BLOCK_FILE jp_T4C9EKI.concise.blc
MAX_NSEQ 948
MAX_INPUT_LEN 950
OUTPUT_FILE jp_T4C9EKI.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 154 937   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 938 154 947 H SPACE
SUB_CHARS 1 938 154 947 E SPACE
SUB_CHARS 1 938 154 947 - SPACE
STRAND 11 941 18
COLOUR_TEXT_REGION 11 941 18 941 51
STRAND 22 941 24
COLOUR_TEXT_REGION 22 941 24 941 51
STRAND 30 941 34
COLOUR_TEXT_REGION 30 941 34 941 51
STRAND 53 941 54
COLOUR_TEXT_REGION 53 941 54 941 51
STRAND 59 941 64
COLOUR_TEXT_REGION 59 941 64 941 51
STRAND 81 941 86
COLOUR_TEXT_REGION 81 941 86 941 51
STRAND 91 941 97
COLOUR_TEXT_REGION 91 941 97 941 51
STRAND 102 941 104
COLOUR_TEXT_REGION 102 941 104 941 51
STRAND 123 941 129
COLOUR_TEXT_REGION 123 941 129 941 51
STRAND 134 941 138
COLOUR_TEXT_REGION 134 941 138 941 51
HELIX 48 941 52
COLOUR_TEXT_REGION 48 941 52 941 50
HELIX 65 941 68
COLOUR_TEXT_REGION 65 941 68 941 50
HELIX 141 941 144
COLOUR_TEXT_REGION 141 941 144 941 50
HELIX 147 941 152
COLOUR_TEXT_REGION 147 941 152 941 50
STRAND 11 946 18
COLOUR_TEXT_REGION 11 946 18 946 51
STRAND 22 946 24
COLOUR_TEXT_REGION 22 946 24 946 51
STRAND 29 946 34
COLOUR_TEXT_REGION 29 946 34 946 51
STRAND 48 946 54
COLOUR_TEXT_REGION 48 946 54 946 51
STRAND 59 946 65
COLOUR_TEXT_REGION 59 946 65 946 51
STRAND 81 946 87
COLOUR_TEXT_REGION 81 946 87 946 51
STRAND 91 946 97
COLOUR_TEXT_REGION 91 946 97 946 51
STRAND 102 946 104
COLOUR_TEXT_REGION 102 946 104 946 51
STRAND 124 946 129
COLOUR_TEXT_REGION 124 946 129 946 51
STRAND 134 946 138
COLOUR_TEXT_REGION 134 946 138 946 51
HELIX 141 946 144
COLOUR_TEXT_REGION 141 946 144 946 50
HELIX 147 946 152
COLOUR_TEXT_REGION 147 946 152 946 50
STRAND 12 947 18
COLOUR_TEXT_REGION 12 947 18 947 51
STRAND 21 947 24
COLOUR_TEXT_REGION 21 947 24 947 51
STRAND 31 947 33
COLOUR_TEXT_REGION 31 947 33 947 51
STRAND 60 947 63
COLOUR_TEXT_REGION 60 947 63 947 51
STRAND 81 947 86
COLOUR_TEXT_REGION 81 947 86 947 51
STRAND 90 947 98
COLOUR_TEXT_REGION 90 947 98 947 51
STRAND 103 947 104
COLOUR_TEXT_REGION 103 947 104 947 51
STRAND 123 947 129
COLOUR_TEXT_REGION 123 947 129 947 51
STRAND 134 947 138
COLOUR_TEXT_REGION 134 947 138 947 51
HELIX 48 947 54
COLOUR_TEXT_REGION 48 947 54 947 50
HELIX 65 947 69
COLOUR_TEXT_REGION 65 947 69 947 50
HELIX 140 947 143
COLOUR_TEXT_REGION 140 947 143 947 50
HELIX 146 947 153
COLOUR_TEXT_REGION 146 947 153 947 50