SILENT_MODE
BLOCK_FILE jp_yoI78fe.concise.blc
MAX_NSEQ 210
MAX_INPUT_LEN 212
OUTPUT_FILE jp_yoI78fe.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 90 199   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 200 90 209 H SPACE
SUB_CHARS 1 200 90 209 E SPACE
SUB_CHARS 1 200 90 209 - SPACE
STRAND 19 203 19
COLOUR_TEXT_REGION 19 203 19 203 51
HELIX 7 203 18
COLOUR_TEXT_REGION 7 203 18 203 50
HELIX 30 203 47
COLOUR_TEXT_REGION 30 203 47 203 50
HELIX 60 203 70
COLOUR_TEXT_REGION 60 203 70 203 50
HELIX 72 203 73
COLOUR_TEXT_REGION 72 203 73 203 50
HELIX 79 203 88
COLOUR_TEXT_REGION 79 203 88 203 50
STRAND 18 208 20
COLOUR_TEXT_REGION 18 208 20 208 51
HELIX 7 208 16
COLOUR_TEXT_REGION 7 208 16 208 50
HELIX 30 208 46
COLOUR_TEXT_REGION 30 208 46 208 50
HELIX 60 208 69
COLOUR_TEXT_REGION 60 208 69 208 50
HELIX 72 208 73
COLOUR_TEXT_REGION 72 208 73 208 50
HELIX 79 208 88
COLOUR_TEXT_REGION 79 208 88 208 50
HELIX 7 209 19
COLOUR_TEXT_REGION 7 209 19 209 50
HELIX 30 209 48
COLOUR_TEXT_REGION 30 209 48 209 50
HELIX 60 209 75
COLOUR_TEXT_REGION 60 209 75 209 50
HELIX 78 209 88
COLOUR_TEXT_REGION 78 209 88 209 50