SILENT_MODE
BLOCK_FILE jp_RHthz8P.concise.blc
MAX_NSEQ 300
MAX_INPUT_LEN 302
OUTPUT_FILE jp_RHthz8P.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 90 289   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 290 90 299 H SPACE
SUB_CHARS 1 290 90 299 E SPACE
SUB_CHARS 1 290 90 299 - SPACE
STRAND 3 293 12
COLOUR_TEXT_REGION 3 293 12 293 51
STRAND 41 293 47
COLOUR_TEXT_REGION 41 293 47 293 51
STRAND 52 293 57
COLOUR_TEXT_REGION 52 293 57 293 51
STRAND 85 293 89
COLOUR_TEXT_REGION 85 293 89 293 51
HELIX 17 293 31
COLOUR_TEXT_REGION 17 293 31 293 50
HELIX 61 293 81
COLOUR_TEXT_REGION 61 293 81 293 50
STRAND 3 298 12
COLOUR_TEXT_REGION 3 298 12 298 51
STRAND 41 298 47
COLOUR_TEXT_REGION 41 298 47 298 51
STRAND 52 298 58
COLOUR_TEXT_REGION 52 298 58 298 51
STRAND 85 298 89
COLOUR_TEXT_REGION 85 298 89 298 51
HELIX 17 298 31
COLOUR_TEXT_REGION 17 298 31 298 50
HELIX 61 298 81
COLOUR_TEXT_REGION 61 298 81 298 50
STRAND 3 299 12
COLOUR_TEXT_REGION 3 299 12 299 51
STRAND 41 299 47
COLOUR_TEXT_REGION 41 299 47 299 51
STRAND 52 299 57
COLOUR_TEXT_REGION 52 299 57 299 51
STRAND 85 299 89
COLOUR_TEXT_REGION 85 299 89 299 51
HELIX 18 299 31
COLOUR_TEXT_REGION 18 299 31 299 50
HELIX 61 299 81
COLOUR_TEXT_REGION 61 299 81 299 50