SILENT_MODE BLOCK_FILE jp_W1bB7Ta.concise.blc MAX_NSEQ 97 MAX_INPUT_LEN 99 OUTPUT_FILE jp_W1bB7Ta.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 85 86 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 87 85 96 H SPACE SUB_CHARS 1 87 85 96 E SPACE SUB_CHARS 1 87 85 96 - SPACE HELIX 4 90 19 COLOUR_TEXT_REGION 4 90 19 90 50 HELIX 26 90 40 COLOUR_TEXT_REGION 26 90 40 90 50 HELIX 48 90 61 COLOUR_TEXT_REGION 48 90 61 90 50 HELIX 69 90 82 COLOUR_TEXT_REGION 69 90 82 90 50 HELIX 3 95 19 COLOUR_TEXT_REGION 3 95 19 95 50 HELIX 26 95 40 COLOUR_TEXT_REGION 26 95 40 95 50 HELIX 48 95 61 COLOUR_TEXT_REGION 48 95 61 95 50 HELIX 69 95 82 COLOUR_TEXT_REGION 69 95 82 95 50 HELIX 4 96 18 COLOUR_TEXT_REGION 4 96 18 96 50 HELIX 26 96 40 COLOUR_TEXT_REGION 26 96 40 96 50 HELIX 48 96 61 COLOUR_TEXT_REGION 48 96 61 96 50 HELIX 68 96 83 COLOUR_TEXT_REGION 68 96 83 96 50