SILENT_MODE BLOCK_FILE jp_H_urd30.concise.blc MAX_NSEQ 50 MAX_INPUT_LEN 50 OUTPUT_FILE jp_H_urd30.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 125 5 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 6 125 15 H SPACE SUB_CHARS 1 6 125 15 E SPACE SUB_CHARS 1 6 125 15 - SPACE STRAND 6 9 11 COLOUR_TEXT_REGION 6 9 11 9 51 STRAND 42 9 45 COLOUR_TEXT_REGION 42 9 45 9 51 STRAND 56 9 62 COLOUR_TEXT_REGION 56 9 62 9 51 STRAND 76 9 82 COLOUR_TEXT_REGION 76 9 82 9 51 STRAND 86 9 90 COLOUR_TEXT_REGION 86 9 90 9 51 STRAND 117 9 121 COLOUR_TEXT_REGION 117 9 121 9 51 HELIX 18 9 23 COLOUR_TEXT_REGION 18 9 23 9 50 HELIX 28 9 33 COLOUR_TEXT_REGION 28 9 33 9 50 HELIX 38 9 41 COLOUR_TEXT_REGION 38 9 41 9 50 HELIX 46 9 49 COLOUR_TEXT_REGION 46 9 49 9 50 HELIX 97 9 110 COLOUR_TEXT_REGION 97 9 110 9 50 HELIX 116 9 116 COLOUR_TEXT_REGION 116 9 116 9 50 STRAND 6 14 11 COLOUR_TEXT_REGION 6 14 11 14 51 STRAND 42 14 44 COLOUR_TEXT_REGION 42 14 44 14 51 STRAND 57 14 60 COLOUR_TEXT_REGION 57 14 60 14 51 STRAND 76 14 82 COLOUR_TEXT_REGION 76 14 82 14 51 STRAND 86 14 90 COLOUR_TEXT_REGION 86 14 90 14 51 STRAND 117 14 121 COLOUR_TEXT_REGION 117 14 121 14 51 HELIX 18 14 23 COLOUR_TEXT_REGION 18 14 23 14 50 HELIX 28 14 33 COLOUR_TEXT_REGION 28 14 33 14 50 HELIX 39 14 39 COLOUR_TEXT_REGION 39 14 39 14 50 HELIX 41 14 41 COLOUR_TEXT_REGION 41 14 41 14 50 HELIX 46 14 49 COLOUR_TEXT_REGION 46 14 49 14 50 HELIX 97 14 110 COLOUR_TEXT_REGION 97 14 110 14 50 STRAND 6 15 11 COLOUR_TEXT_REGION 6 15 11 15 51 STRAND 42 15 46 COLOUR_TEXT_REGION 42 15 46 15 51 STRAND 48 15 48 COLOUR_TEXT_REGION 48 15 48 15 51 STRAND 55 15 63 COLOUR_TEXT_REGION 55 15 63 15 51 STRAND 69 15 69 COLOUR_TEXT_REGION 69 15 69 15 51 STRAND 77 15 81 COLOUR_TEXT_REGION 77 15 81 15 51 STRAND 86 15 90 COLOUR_TEXT_REGION 86 15 90 15 51 STRAND 119 15 120 COLOUR_TEXT_REGION 119 15 120 15 51 HELIX 16 15 22 COLOUR_TEXT_REGION 16 15 22 15 50 HELIX 28 15 34 COLOUR_TEXT_REGION 28 15 34 15 50 HELIX 37 15 41 COLOUR_TEXT_REGION 37 15 41 15 50 HELIX 97 15 118 COLOUR_TEXT_REGION 97 15 118 15 50