QUERY           : GGSMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSGLPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR : QUERY 
UniRef90_P03630 : ----SKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDCSLPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVVQATSEDLVVNLVPLGR : UniRef90_P03630

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-- :
OrigSeq         : GGSMSKTIVLSVGEATRTLTEIQSTADRQIFEEKVGPLVGRLRLTASLRQNGAKTAYRVNLKLDQADVVDSGLPKVRYTQVWSHDVTIVANSTEASRKSLYDLTKSLVATSQVEDLVVNLVPLGR : OrigSeq

Jnet            : -----EEEEEE------HHHHHH----HHHHHH----HHHHEEEEHHHH------EEEEEEE-------------EEEEEEE---EEEEE------HHHHHHHHHHHHHH-----HEEEEE---- : Jnet
jhmm            : -----EEEEEE------HHHHHH----HHHHHH-----H-HEEE-HHHH-------EEEE---------------EEEEEEE---EEEEE------HHHHHHHHHHHHHH------EEEEE---- : jhmm
jpssm           : -----EEEEEE----HHHHHHH-----HHHHHHH--HHHHHEEEEE-E------EEEEEEEEE-----E-------EEEEE----EEEEE------HHHHHHHHHHHHHHHHHHHHHHEE----- : jpssm

Lupas 14        : ----------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : ----------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : ----------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ------BBBBBB--B--BB--B---B---BB---BB-BBBBB-BBB-B------BBB-B-B-B--B-BB---B--B-B--BB---BBBBB---------BB-BB--BBB-B-B--BBB-BB---- : Jnet_25
Jnet_5          : -------BBB-B------B--B------------B------B-B--------------B----------------B---------B-BB----------B--B------------BBB-B----- : Jnet_5
Jnet_0          : ----------------------------------------------------------------------------------------------------------------------------- : Jnet_0
Jnet Rel        : 99987167775166030677741774278887512322410356201104677403787831147641315777525664216855887447887427899999999987031102123404899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.