SILENT_MODE BLOCK_FILE jp_ITrDLdA.concise.blc MAX_NSEQ 954 MAX_INPUT_LEN 956 OUTPUT_FILE jp_ITrDLdA.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 156 943 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 944 156 953 H SPACE SUB_CHARS 1 944 156 953 E SPACE SUB_CHARS 1 944 156 953 - SPACE STRAND 17 947 22 COLOUR_TEXT_REGION 17 947 22 947 51 STRAND 29 947 33 COLOUR_TEXT_REGION 29 947 33 947 51 STRAND 45 947 50 COLOUR_TEXT_REGION 45 947 50 947 51 STRAND 66 947 70 COLOUR_TEXT_REGION 66 947 70 947 51 STRAND 111 947 122 COLOUR_TEXT_REGION 111 947 122 947 51 STRAND 127 947 139 COLOUR_TEXT_REGION 127 947 139 947 51 STRAND 146 947 149 COLOUR_TEXT_REGION 146 947 149 947 51 STRAND 153 947 154 COLOUR_TEXT_REGION 153 947 154 947 51 HELIX 3 947 12 COLOUR_TEXT_REGION 3 947 12 947 50 HELIX 57 947 62 COLOUR_TEXT_REGION 57 947 62 947 50 HELIX 75 947 80 COLOUR_TEXT_REGION 75 947 80 947 50 STRAND 18 952 22 COLOUR_TEXT_REGION 18 952 22 952 51 STRAND 29 952 33 COLOUR_TEXT_REGION 29 952 33 952 51 STRAND 37 952 38 COLOUR_TEXT_REGION 37 952 38 952 51 STRAND 45 952 50 COLOUR_TEXT_REGION 45 952 50 952 51 STRAND 65 952 70 COLOUR_TEXT_REGION 65 952 70 952 51 STRAND 106 952 107 COLOUR_TEXT_REGION 106 952 107 952 51 STRAND 111 952 123 COLOUR_TEXT_REGION 111 952 123 952 51 STRAND 127 952 139 COLOUR_TEXT_REGION 127 952 139 952 51 STRAND 146 952 149 COLOUR_TEXT_REGION 146 952 149 952 51 HELIX 3 952 11 COLOUR_TEXT_REGION 3 952 11 952 50 HELIX 57 952 62 COLOUR_TEXT_REGION 57 952 62 952 50 HELIX 75 952 81 COLOUR_TEXT_REGION 75 952 81 952 50 STRAND 17 953 22 COLOUR_TEXT_REGION 17 953 22 953 51 STRAND 29 953 33 COLOUR_TEXT_REGION 29 953 33 953 51 STRAND 45 953 50 COLOUR_TEXT_REGION 45 953 50 953 51 STRAND 66 953 70 COLOUR_TEXT_REGION 66 953 70 953 51 STRAND 111 953 122 COLOUR_TEXT_REGION 111 953 122 953 51 STRAND 127 953 139 COLOUR_TEXT_REGION 127 953 139 953 51 STRAND 146 953 149 COLOUR_TEXT_REGION 146 953 149 953 51 STRAND 153 953 154 COLOUR_TEXT_REGION 153 953 154 953 51 HELIX 3 953 12 COLOUR_TEXT_REGION 3 953 12 953 50 HELIX 57 953 61 COLOUR_TEXT_REGION 57 953 61 953 50 HELIX 74 953 79 COLOUR_TEXT_REGION 74 953 79 953 50