SILENT_MODE BLOCK_FILE jp_D8sGfmx.concise.blc MAX_NSEQ 615 MAX_INPUT_LEN 617 OUTPUT_FILE jp_D8sGfmx.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 236 604 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 605 236 614 H SPACE SUB_CHARS 1 605 236 614 E SPACE SUB_CHARS 1 605 236 614 - SPACE STRAND 12 608 18 COLOUR_TEXT_REGION 12 608 18 608 51 STRAND 22 608 27 COLOUR_TEXT_REGION 22 608 27 608 51 STRAND 39 608 42 COLOUR_TEXT_REGION 39 608 42 608 51 STRAND 100 608 103 COLOUR_TEXT_REGION 100 608 103 608 51 STRAND 133 608 136 COLOUR_TEXT_REGION 133 608 136 608 51 HELIX 45 608 57 COLOUR_TEXT_REGION 45 608 57 608 50 HELIX 67 608 77 COLOUR_TEXT_REGION 67 608 77 608 50 HELIX 84 608 95 COLOUR_TEXT_REGION 84 608 95 608 50 HELIX 108 608 128 COLOUR_TEXT_REGION 108 608 128 608 50 HELIX 146 608 157 COLOUR_TEXT_REGION 146 608 157 608 50 HELIX 162 608 185 COLOUR_TEXT_REGION 162 608 185 608 50 HELIX 190 608 197 COLOUR_TEXT_REGION 190 608 197 608 50 HELIX 201 608 207 COLOUR_TEXT_REGION 201 608 207 608 50 HELIX 211 608 234 COLOUR_TEXT_REGION 211 608 234 608 50 STRAND 15 613 18 COLOUR_TEXT_REGION 15 613 18 613 51 STRAND 22 613 27 COLOUR_TEXT_REGION 22 613 27 613 51 STRAND 39 613 42 COLOUR_TEXT_REGION 39 613 42 613 51 STRAND 61 613 62 COLOUR_TEXT_REGION 61 613 62 613 51 STRAND 99 613 103 COLOUR_TEXT_REGION 99 613 103 613 51 STRAND 133 613 136 COLOUR_TEXT_REGION 133 613 136 613 51 HELIX 45 613 57 COLOUR_TEXT_REGION 45 613 57 613 50 HELIX 69 613 77 COLOUR_TEXT_REGION 69 613 77 613 50 HELIX 84 613 95 COLOUR_TEXT_REGION 84 613 95 613 50 HELIX 108 613 128 COLOUR_TEXT_REGION 108 613 128 613 50 HELIX 146 613 157 COLOUR_TEXT_REGION 146 613 157 613 50 HELIX 162 613 185 COLOUR_TEXT_REGION 162 613 185 613 50 HELIX 190 613 197 COLOUR_TEXT_REGION 190 613 197 613 50 HELIX 201 613 207 COLOUR_TEXT_REGION 201 613 207 613 50 HELIX 211 613 234 COLOUR_TEXT_REGION 211 613 234 613 50 STRAND 11 614 18 COLOUR_TEXT_REGION 11 614 18 614 51 STRAND 22 614 27 COLOUR_TEXT_REGION 22 614 27 614 51 STRAND 39 614 42 COLOUR_TEXT_REGION 39 614 42 614 51 STRAND 100 614 102 COLOUR_TEXT_REGION 100 614 102 614 51 STRAND 133 614 135 COLOUR_TEXT_REGION 133 614 135 614 51 HELIX 45 614 57 COLOUR_TEXT_REGION 45 614 57 614 50 HELIX 66 614 78 COLOUR_TEXT_REGION 66 614 78 614 50 HELIX 84 614 95 COLOUR_TEXT_REGION 84 614 95 614 50 HELIX 108 614 128 COLOUR_TEXT_REGION 108 614 128 614 50 HELIX 146 614 157 COLOUR_TEXT_REGION 146 614 157 614 50 HELIX 162 614 174 COLOUR_TEXT_REGION 162 614 174 614 50 HELIX 176 614 185 COLOUR_TEXT_REGION 176 614 185 614 50 HELIX 190 614 207 COLOUR_TEXT_REGION 190 614 207 614 50 HELIX 212 614 234 COLOUR_TEXT_REGION 212 614 234 614 50