SILENT_MODE BLOCK_FILE jp_mtZgbdZ.concise.blc MAX_NSEQ 596 MAX_INPUT_LEN 598 OUTPUT_FILE jp_mtZgbdZ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 197 585 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 586 197 595 H SPACE SUB_CHARS 1 586 197 595 E SPACE SUB_CHARS 1 586 197 595 - SPACE STRAND 3 589 8 COLOUR_TEXT_REGION 3 589 8 589 51 STRAND 28 589 33 COLOUR_TEXT_REGION 28 589 33 589 51 STRAND 47 589 50 COLOUR_TEXT_REGION 47 589 50 589 51 STRAND 87 589 93 COLOUR_TEXT_REGION 87 589 93 589 51 STRAND 117 589 123 COLOUR_TEXT_REGION 117 589 123 589 51 STRAND 149 589 153 COLOUR_TEXT_REGION 149 589 153 589 51 HELIX 12 589 21 COLOUR_TEXT_REGION 12 589 21 589 50 HELIX 36 589 40 COLOUR_TEXT_REGION 36 589 40 589 50 HELIX 64 589 82 COLOUR_TEXT_REGION 64 589 82 589 50 HELIX 102 589 112 COLOUR_TEXT_REGION 102 589 112 589 50 HELIX 130 589 145 COLOUR_TEXT_REGION 130 589 145 589 50 HELIX 157 589 161 COLOUR_TEXT_REGION 157 589 161 589 50 HELIX 166 589 191 COLOUR_TEXT_REGION 166 589 191 589 50 STRAND 3 594 8 COLOUR_TEXT_REGION 3 594 8 594 51 STRAND 28 594 33 COLOUR_TEXT_REGION 28 594 33 594 51 STRAND 47 594 50 COLOUR_TEXT_REGION 47 594 50 594 51 STRAND 87 594 92 COLOUR_TEXT_REGION 87 594 92 594 51 STRAND 117 594 123 COLOUR_TEXT_REGION 117 594 123 594 51 STRAND 149 594 153 COLOUR_TEXT_REGION 149 594 153 594 51 HELIX 12 594 21 COLOUR_TEXT_REGION 12 594 21 594 50 HELIX 36 594 40 COLOUR_TEXT_REGION 36 594 40 594 50 HELIX 64 594 82 COLOUR_TEXT_REGION 64 594 82 594 50 HELIX 102 594 112 COLOUR_TEXT_REGION 102 594 112 594 50 HELIX 130 594 146 COLOUR_TEXT_REGION 130 594 146 594 50 HELIX 156 594 160 COLOUR_TEXT_REGION 156 594 160 594 50 HELIX 168 594 191 COLOUR_TEXT_REGION 168 594 191 594 50 STRAND 3 595 8 COLOUR_TEXT_REGION 3 595 8 595 51 STRAND 28 595 33 COLOUR_TEXT_REGION 28 595 33 595 51 STRAND 47 595 51 COLOUR_TEXT_REGION 47 595 51 595 51 STRAND 87 595 93 COLOUR_TEXT_REGION 87 595 93 595 51 STRAND 116 595 122 COLOUR_TEXT_REGION 116 595 122 595 51 STRAND 149 595 152 COLOUR_TEXT_REGION 149 595 152 595 51 HELIX 12 595 21 COLOUR_TEXT_REGION 12 595 21 595 50 HELIX 36 595 40 COLOUR_TEXT_REGION 36 595 40 595 50 HELIX 65 595 81 COLOUR_TEXT_REGION 65 595 81 595 50 HELIX 103 595 110 COLOUR_TEXT_REGION 103 595 110 595 50 HELIX 130 595 145 COLOUR_TEXT_REGION 130 595 145 595 50 HELIX 158 595 161 COLOUR_TEXT_REGION 158 595 161 595 50 HELIX 165 595 190 COLOUR_TEXT_REGION 165 595 190 595 50