SILENT_MODE BLOCK_FILE jp_RNQHoiv.concise.blc MAX_NSEQ 689 MAX_INPUT_LEN 691 OUTPUT_FILE jp_RNQHoiv.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 126 678 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 679 126 688 H SPACE SUB_CHARS 1 679 126 688 E SPACE SUB_CHARS 1 679 126 688 - SPACE STRAND 15 682 23 COLOUR_TEXT_REGION 15 682 23 682 51 STRAND 52 682 58 COLOUR_TEXT_REGION 52 682 58 682 51 STRAND 84 682 91 COLOUR_TEXT_REGION 84 682 91 682 51 STRAND 98 682 106 COLOUR_TEXT_REGION 98 682 106 682 51 HELIX 3 682 10 COLOUR_TEXT_REGION 3 682 10 682 50 HELIX 27 682 39 COLOUR_TEXT_REGION 27 682 39 682 50 HELIX 50 682 51 COLOUR_TEXT_REGION 50 682 51 682 50 HELIX 65 682 79 COLOUR_TEXT_REGION 65 682 79 682 50 STRAND 15 687 23 COLOUR_TEXT_REGION 15 687 23 687 51 STRAND 51 687 58 COLOUR_TEXT_REGION 51 687 58 687 51 STRAND 85 687 91 COLOUR_TEXT_REGION 85 687 91 687 51 STRAND 98 687 106 COLOUR_TEXT_REGION 98 687 106 687 51 HELIX 3 687 10 COLOUR_TEXT_REGION 3 687 10 687 50 HELIX 27 687 38 COLOUR_TEXT_REGION 27 687 38 687 50 HELIX 50 687 50 COLOUR_TEXT_REGION 50 687 50 687 50 HELIX 65 687 79 COLOUR_TEXT_REGION 65 687 79 687 50 STRAND 15 688 23 COLOUR_TEXT_REGION 15 688 23 688 51 STRAND 56 688 58 COLOUR_TEXT_REGION 56 688 58 688 51 STRAND 84 688 92 COLOUR_TEXT_REGION 84 688 92 688 51 STRAND 98 688 106 COLOUR_TEXT_REGION 98 688 106 688 51 HELIX 3 688 10 COLOUR_TEXT_REGION 3 688 10 688 50 HELIX 28 688 39 COLOUR_TEXT_REGION 28 688 39 688 50 HELIX 50 688 55 COLOUR_TEXT_REGION 50 688 55 688 50 HELIX 65 688 79 COLOUR_TEXT_REGION 65 688 79 688 50