SILENT_MODE BLOCK_FILE jp_eqThQD2.concise.blc MAX_NSEQ 900 MAX_INPUT_LEN 902 OUTPUT_FILE jp_eqThQD2.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 261 889 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 890 261 899 H SPACE SUB_CHARS 1 890 261 899 E SPACE SUB_CHARS 1 890 261 899 - SPACE STRAND 2 893 8 COLOUR_TEXT_REGION 2 893 8 893 51 STRAND 38 893 41 COLOUR_TEXT_REGION 38 893 41 893 51 STRAND 71 893 73 COLOUR_TEXT_REGION 71 893 73 893 51 STRAND 80 893 80 COLOUR_TEXT_REGION 80 893 80 893 51 STRAND 104 893 107 COLOUR_TEXT_REGION 104 893 107 893 51 STRAND 112 893 115 COLOUR_TEXT_REGION 112 893 115 893 51 STRAND 169 893 172 COLOUR_TEXT_REGION 169 893 172 893 51 STRAND 178 893 181 COLOUR_TEXT_REGION 178 893 181 893 51 STRAND 205 893 209 COLOUR_TEXT_REGION 205 893 209 893 51 STRAND 226 893 228 COLOUR_TEXT_REGION 226 893 228 893 51 HELIX 23 893 34 COLOUR_TEXT_REGION 23 893 34 893 50 HELIX 47 893 56 COLOUR_TEXT_REGION 47 893 56 893 50 HELIX 87 893 99 COLOUR_TEXT_REGION 87 893 99 893 50 HELIX 124 893 126 COLOUR_TEXT_REGION 124 893 126 893 50 HELIX 157 893 164 COLOUR_TEXT_REGION 157 893 164 893 50 HELIX 182 893 182 COLOUR_TEXT_REGION 182 893 182 893 50 HELIX 184 893 197 COLOUR_TEXT_REGION 184 893 197 893 50 HELIX 216 893 221 COLOUR_TEXT_REGION 216 893 221 893 50 HELIX 232 893 239 COLOUR_TEXT_REGION 232 893 239 893 50 HELIX 250 893 258 COLOUR_TEXT_REGION 250 893 258 893 50 STRAND 3 898 8 COLOUR_TEXT_REGION 3 898 8 898 51 STRAND 38 898 42 COLOUR_TEXT_REGION 38 898 42 898 51 STRAND 64 898 66 COLOUR_TEXT_REGION 64 898 66 898 51 STRAND 70 898 73 COLOUR_TEXT_REGION 70 898 73 898 51 STRAND 79 898 82 COLOUR_TEXT_REGION 79 898 82 898 51 STRAND 104 898 108 COLOUR_TEXT_REGION 104 898 108 898 51 STRAND 112 898 115 COLOUR_TEXT_REGION 112 898 115 898 51 STRAND 169 898 173 COLOUR_TEXT_REGION 169 898 173 898 51 STRAND 178 898 182 COLOUR_TEXT_REGION 178 898 182 898 51 STRAND 206 898 209 COLOUR_TEXT_REGION 206 898 209 898 51 STRAND 225 898 228 COLOUR_TEXT_REGION 225 898 228 898 51 HELIX 23 898 34 COLOUR_TEXT_REGION 23 898 34 898 50 HELIX 47 898 56 COLOUR_TEXT_REGION 47 898 56 898 50 HELIX 87 898 99 COLOUR_TEXT_REGION 87 898 99 898 50 HELIX 122 898 127 COLOUR_TEXT_REGION 122 898 127 898 50 HELIX 156 898 164 COLOUR_TEXT_REGION 156 898 164 898 50 HELIX 188 898 198 COLOUR_TEXT_REGION 188 898 198 898 50 HELIX 215 898 221 COLOUR_TEXT_REGION 215 898 221 898 50 HELIX 232 898 239 COLOUR_TEXT_REGION 232 898 239 898 50 HELIX 250 898 258 COLOUR_TEXT_REGION 250 898 258 898 50 STRAND 2 899 8 COLOUR_TEXT_REGION 2 899 8 899 51 STRAND 39 899 40 COLOUR_TEXT_REGION 39 899 40 899 51 STRAND 72 899 74 COLOUR_TEXT_REGION 72 899 74 899 51 STRAND 104 899 107 COLOUR_TEXT_REGION 104 899 107 899 51 STRAND 113 899 115 COLOUR_TEXT_REGION 113 899 115 899 51 STRAND 125 899 126 COLOUR_TEXT_REGION 125 899 126 899 51 STRAND 148 899 150 COLOUR_TEXT_REGION 148 899 150 899 51 STRAND 162 899 164 COLOUR_TEXT_REGION 162 899 164 899 51 STRAND 170 899 171 COLOUR_TEXT_REGION 170 899 171 899 51 STRAND 193 899 193 COLOUR_TEXT_REGION 193 899 193 899 51 STRAND 205 899 210 COLOUR_TEXT_REGION 205 899 210 899 51 STRAND 227 899 228 COLOUR_TEXT_REGION 227 899 228 899 51 STRAND 242 899 242 COLOUR_TEXT_REGION 242 899 242 899 51 HELIX 22 899 35 COLOUR_TEXT_REGION 22 899 35 899 50 HELIX 47 899 50 COLOUR_TEXT_REGION 47 899 50 899 50 HELIX 53 899 57 COLOUR_TEXT_REGION 53 899 57 899 50 HELIX 87 899 99 COLOUR_TEXT_REGION 87 899 99 899 50 HELIX 147 899 147 COLOUR_TEXT_REGION 147 899 147 899 50 HELIX 181 899 192 COLOUR_TEXT_REGION 181 899 192 899 50 HELIX 219 899 222 COLOUR_TEXT_REGION 219 899 222 899 50 HELIX 233 899 238 COLOUR_TEXT_REGION 233 899 238 899 50 HELIX 250 899 258 COLOUR_TEXT_REGION 250 899 258 899 50