Filename Description -------- ----------- jp_jk3L1c0.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_jk3L1c0.als Alscript command file. Used to generate PS/PDF outputjp_jk3L1c0.blast.gz PSIBLAST output (compressed) jp_jk3L1c0.coils.csv The output from coils in CSV format jp_jk3L1c0.coilseq.lupas_14 The output from coils using a window length of 14 jp_jk3L1c0.coilseq.lupas_21 The output from coils using a window length of 21 jp_jk3L1c0.coilseq.lupas_28 The output from coils using a window length of 28 jp_jk3L1c0.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_jk3L1c0.concise.blc A BLC file of the prediction and alignment jp_jk3L1c0.concise.pdf A PDF file of the prediction and alignment jp_jk3L1c0.fasta Input query sequence in FASTA format jp_jk3L1c0.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_jk3L1c0.hmm The HHMer2 profile of the alignment jp_jk3L1c0.html A HTML file of the prediction and alignment jp_jk3L1c0.input Your raw input jp_jk3L1c0.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_jk3L1c0.jnet The output from Jnet jp_jk3L1c0.profile PSIBLAST profile jp_jk3L1c0.pssm PSIBLAST PSSM in a format for Jnet jp_jk3L1c0.seq Your sequence jp_jk3L1c0.simple.html The brief HTML output of the query sequence and prediction only jp_jk3L1c0.svg.html A Jalview generated SVG file with summary of the results.