SILENT_MODE
BLOCK_FILE jp_jk3L1c0.concise.blc
MAX_NSEQ 147
MAX_INPUT_LEN 149
OUTPUT_FILE jp_jk3L1c0.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 110 136   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 137 110 146 H SPACE
SUB_CHARS 1 137 110 146 E SPACE
SUB_CHARS 1 137 110 146 - SPACE
STRAND 4 140 14
COLOUR_TEXT_REGION 4 140 14 140 51
STRAND 18 140 25
COLOUR_TEXT_REGION 18 140 25 140 51
STRAND 32 140 35
COLOUR_TEXT_REGION 32 140 35 140 51
STRAND 47 140 54
COLOUR_TEXT_REGION 47 140 54 140 51
STRAND 63 140 73
COLOUR_TEXT_REGION 63 140 73 140 51
STRAND 78 140 85
COLOUR_TEXT_REGION 78 140 85 140 51
STRAND 106 140 108
COLOUR_TEXT_REGION 106 140 108 140 51
HELIX 90 140 101
COLOUR_TEXT_REGION 90 140 101 140 50
STRAND 4 145 14
COLOUR_TEXT_REGION 4 145 14 145 51
STRAND 18 145 25
COLOUR_TEXT_REGION 18 145 25 145 51
STRAND 32 145 35
COLOUR_TEXT_REGION 32 145 35 145 51
STRAND 47 145 54
COLOUR_TEXT_REGION 47 145 54 145 51
STRAND 63 145 73
COLOUR_TEXT_REGION 63 145 73 145 51
STRAND 78 145 85
COLOUR_TEXT_REGION 78 145 85 145 51
STRAND 106 145 109
COLOUR_TEXT_REGION 106 145 109 145 51
HELIX 90 145 102
COLOUR_TEXT_REGION 90 145 102 145 50
STRAND 4 146 8
COLOUR_TEXT_REGION 4 146 8 146 51
STRAND 11 146 14
COLOUR_TEXT_REGION 11 146 14 146 51
STRAND 18 146 26
COLOUR_TEXT_REGION 18 146 26 146 51
STRAND 32 146 35
COLOUR_TEXT_REGION 32 146 35 146 51
STRAND 42 146 43
COLOUR_TEXT_REGION 42 146 43 146 51
STRAND 47 146 54
COLOUR_TEXT_REGION 47 146 54 146 51
STRAND 63 146 74
COLOUR_TEXT_REGION 63 146 74 146 51
STRAND 78 146 86
COLOUR_TEXT_REGION 78 146 86 146 51
STRAND 106 146 108
COLOUR_TEXT_REGION 106 146 108 146 51
HELIX 90 146 99
COLOUR_TEXT_REGION 90 146 99 146 50