SILENT_MODE BLOCK_FILE jp_fl9t0JQ.concise.blc MAX_NSEQ 1134 MAX_INPUT_LEN 1136 OUTPUT_FILE jp_fl9t0JQ.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 153 1123 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 1124 153 1133 H SPACE SUB_CHARS 1 1124 153 1133 E SPACE SUB_CHARS 1 1124 153 1133 - SPACE STRAND 48 1127 51 COLOUR_TEXT_REGION 48 1127 51 1127 51 STRAND 79 1127 84 COLOUR_TEXT_REGION 79 1127 84 1127 51 STRAND 87 1127 92 COLOUR_TEXT_REGION 87 1127 92 1127 51 STRAND 96 1127 107 COLOUR_TEXT_REGION 96 1127 107 1127 51 STRAND 113 1127 127 COLOUR_TEXT_REGION 113 1127 127 1127 51 STRAND 131 1127 142 COLOUR_TEXT_REGION 131 1127 142 1127 51 HELIX 4 1127 32 COLOUR_TEXT_REGION 4 1127 32 1127 50 HELIX 36 1127 41 COLOUR_TEXT_REGION 36 1127 41 1127 50 HELIX 60 1127 71 COLOUR_TEXT_REGION 60 1127 71 1127 50 STRAND 48 1132 51 COLOUR_TEXT_REGION 48 1132 51 1132 51 STRAND 79 1132 84 COLOUR_TEXT_REGION 79 1132 84 1132 51 STRAND 87 1132 92 COLOUR_TEXT_REGION 87 1132 92 1132 51 STRAND 96 1132 106 COLOUR_TEXT_REGION 96 1132 106 1132 51 STRAND 113 1132 127 COLOUR_TEXT_REGION 113 1132 127 1132 51 STRAND 131 1132 141 COLOUR_TEXT_REGION 131 1132 141 1132 51 HELIX 4 1132 32 COLOUR_TEXT_REGION 4 1132 32 1132 50 HELIX 36 1132 42 COLOUR_TEXT_REGION 36 1132 42 1132 50 HELIX 60 1132 71 COLOUR_TEXT_REGION 60 1132 71 1132 50 STRAND 47 1133 52 COLOUR_TEXT_REGION 47 1133 52 1133 51 STRAND 80 1133 84 COLOUR_TEXT_REGION 80 1133 84 1133 51 STRAND 88 1133 91 COLOUR_TEXT_REGION 88 1133 91 1133 51 STRAND 95 1133 107 COLOUR_TEXT_REGION 95 1133 107 1133 51 STRAND 114 1133 127 COLOUR_TEXT_REGION 114 1133 127 1133 51 STRAND 130 1133 142 COLOUR_TEXT_REGION 130 1133 142 1133 51 HELIX 3 1133 32 COLOUR_TEXT_REGION 3 1133 32 1133 50 HELIX 36 1133 41 COLOUR_TEXT_REGION 36 1133 41 1133 50 HELIX 60 1133 71 COLOUR_TEXT_REGION 60 1133 71 1133 50