QUERY                  : ATFGMGDRVRKKSGAAWQGQIVGWYCTNLTPEGYAVESEAHPGSVQIYPVAALERIN : QUERY 
UniRef90_H5WLJ1        : -TFRMGDKVRKVRGSQWHGRVVGWYSTDLTPEGYAVESDTERGSVQIYPASALER-- : UniRef90_H5WLJ1
UniRef90_UPI0003671B41 : -AFDEGDLVRKKSGSWWEGRVVGTYTTEQTPRGYAVQLDKPFGPVQIYPESALE--- : UniRef90_UPI0003671B41

                       : 1---------11--------21--------31--------41--------51----- :
OrigSeq                : ATFGMGDRVRKKSGAAWQGQIVGWYCTNLTPEGYAVESEAHPGSVQIYPVAALERIN : OrigSeq

Jnet                   : ---------H---------EEEEEEE-------EEEE-------EEEE--------- : Jnet
jhmm                   : -------------------EEEEEEE-------EEEE-------EEEE--------- : jhmm
jpssm                  : -------HHHH-----EEEEEEEEEE-------EEEE-------EEEEE-------- : jpssm

Lupas 14               : --------------------------------------------------------- : Lupas 14
Lupas 21               : --------------------------------------------------------- : Lupas 21
Lupas 28               : --------------------------------------------------------- : Lupas 28

Jnet_25                : --B-----B-------B-B-BBBBBB----B-BBBB------B-B-BBB--BB---- : Jnet_25
Jnet_5                 : --------------------BBB---------------------B-B---------- : Jnet_5
Jnet_0                 : ----------------------B---------------------------------- : Jnet_0
Jnet Rel               : 996665310013675113258888724777774355246788735776134331489 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.