SILENT_MODE
BLOCK_FILE jp_LWHgrgY.concise.blc
MAX_NSEQ 979
MAX_INPUT_LEN 981
OUTPUT_FILE jp_LWHgrgY.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 113 968   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 969 113 978 H SPACE
SUB_CHARS 1 969 113 978 E SPACE
SUB_CHARS 1 969 113 978 - SPACE
HELIX 8 972 26
COLOUR_TEXT_REGION 8 972 26 972 50
HELIX 32 972 44
COLOUR_TEXT_REGION 32 972 44 972 50
HELIX 49 972 55
COLOUR_TEXT_REGION 49 972 55 972 50
HELIX 59 972 85
COLOUR_TEXT_REGION 59 972 85 972 50
HELIX 91 972 111
COLOUR_TEXT_REGION 91 972 111 972 50
HELIX 9 977 26
COLOUR_TEXT_REGION 9 977 26 977 50
HELIX 32 977 44
COLOUR_TEXT_REGION 32 977 44 977 50
HELIX 49 977 55
COLOUR_TEXT_REGION 49 977 55 977 50
HELIX 60 977 85
COLOUR_TEXT_REGION 60 977 85 977 50
HELIX 91 977 111
COLOUR_TEXT_REGION 91 977 111 977 50
HELIX 6 978 27
COLOUR_TEXT_REGION 6 978 27 978 50
HELIX 33 978 44
COLOUR_TEXT_REGION 33 978 44 978 50
HELIX 48 978 56
COLOUR_TEXT_REGION 48 978 56 978 50
HELIX 59 978 68
COLOUR_TEXT_REGION 59 978 68 978 50
HELIX 73 978 85
COLOUR_TEXT_REGION 73 978 85 978 50
HELIX 91 978 111
COLOUR_TEXT_REGION 91 978 111 978 50