SILENT_MODE BLOCK_FILE jp_KvYnRMe.concise.blc MAX_NSEQ 323 MAX_INPUT_LEN 325 OUTPUT_FILE jp_KvYnRMe.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 107 312 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 313 107 322 H SPACE SUB_CHARS 1 313 107 322 E SPACE SUB_CHARS 1 313 107 322 - SPACE STRAND 5 316 12 COLOUR_TEXT_REGION 5 316 12 316 51 STRAND 22 316 29 COLOUR_TEXT_REGION 22 316 29 316 51 STRAND 67 316 69 COLOUR_TEXT_REGION 67 316 69 316 51 STRAND 72 316 81 COLOUR_TEXT_REGION 72 316 81 316 51 STRAND 83 316 90 COLOUR_TEXT_REGION 83 316 90 316 51 STRAND 95 316 99 COLOUR_TEXT_REGION 95 316 99 316 51 HELIX 40 316 49 COLOUR_TEXT_REGION 40 316 49 316 50 STRAND 5 321 12 COLOUR_TEXT_REGION 5 321 12 321 51 STRAND 21 321 28 COLOUR_TEXT_REGION 21 321 28 321 51 STRAND 67 321 68 COLOUR_TEXT_REGION 67 321 68 321 51 STRAND 72 321 81 COLOUR_TEXT_REGION 72 321 81 321 51 STRAND 83 321 90 COLOUR_TEXT_REGION 83 321 90 321 51 STRAND 95 321 99 COLOUR_TEXT_REGION 95 321 99 321 51 HELIX 40 321 49 COLOUR_TEXT_REGION 40 321 49 321 50 STRAND 5 322 12 COLOUR_TEXT_REGION 5 322 12 322 51 STRAND 23 322 29 COLOUR_TEXT_REGION 23 322 29 322 51 STRAND 67 322 69 COLOUR_TEXT_REGION 67 322 69 322 51 STRAND 72 322 80 COLOUR_TEXT_REGION 72 322 80 322 51 STRAND 83 322 90 COLOUR_TEXT_REGION 83 322 90 322 51 HELIX 40 322 49 COLOUR_TEXT_REGION 40 322 49 322 50 HELIX 94 322 98 COLOUR_TEXT_REGION 94 322 98 322 50