QUERY                  : SPEFGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIARA : QUERY 
UniRef90_F6S5J9        : ---AGYWITCCPTCDLDVNTWEPFYSTELNKPAMIYCSNGDGHWVHAQCMDLSERILIQLSEGNTKYFCNEHIEIARG : UniRef90_F6S5J9
UniRef90_Q91830        : ---TGYWIKCCPDCDMDRNTWEPFYSTELNKPSMIFCSKDGGHWVHSQCMDLSETMLKYLSQNNIKYFCNEHVEVARG : UniRef90_Q91830
UniRef90_W5NLB1        : --QTGYWIKCCLDCQVDINTWVPFYSTELNKPAMIFCSRGEGHWVHAQCMDLSETLLVRLSQENTKYFCVDHMDVVQG : UniRef90_W5NLB1
UniRef90_UPI000442011A : ----GYWITCCAGCVVDINTWVPLYSTELNKPAMIFCSNGEGHWVHAQCMDLSENMLIHLSQVNIKYFCTEHISLARG : UniRef90_UPI000442011A
UniRef90_Q90XI0        : --EAGYWINCSAGCDIDINTWVPYYSTELNKPAMIFCSNGEGHWVHAQCMGLSESMLLHLSKENSKYFCNDHSRVA-- : UniRef90_Q90XI0
UniRef90_J9WQC9        : ---TGYWITCSASCNIDINTWVPFYSTELSKPAMILCSGGAGHWVHAQCMDLSESILLHLSEANIKYFCNKHVDLNK- : UniRef90_J9WQC9
UniRef90_H3A6M9        : ---TGYWIKCCTSCDLNVNTWVPVYSTELNKPAMIYCSNGEGHWVHAECMGLSELMLMQLSQENRKYYCNDHVDLDK- : UniRef90_H3A6M9
UniRef90_Q90XH9        : ---AGYWIKCCASCNVDINTWVPLYTTELNKPAMIYCSRSEGHWVHARCTDLSENMLIQLSQDNTKYFCVDHVEWALG : UniRef90_Q90XH9
UniRef90_Q3L0Q3        : --QTGYWIKCCLTCQVNPNTWEPYYSTELTRPAMIFCSRGEGHWVHAQCMELPESLLLRLSQGNSKYFCLDH------ : UniRef90_Q3L0Q3
UniRef90_Q90XI3        : --EEGYWIKCSSACNMNVNIWEPYYSTELNKPAMIFCSGDDGHWVHAQCMNLAESQLIQFSQENTKYFCNEHY-IDRG : UniRef90_Q90XI3
UniRef90_UPI00045756AD : --EEGYWIKCIVTCSVNVNTWVPYYSTELNKPAMIFCSGGGGHWVHAQCMGLSESELIHLSQEKTKYFCNVH------ : UniRef90_UPI00045756AD
UniRef90_J9WL04        : ----------------DINTWVPFYSTELNKPAMILCSSGDGHWVHAQCMDLSETMLLRLSEANVKYFCNEHVDLNKG : UniRef90_J9WL04
UniRef90_L8Y7D1        : ---TGYWIICCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAEHTLISRKQ---------------- : UniRef90_L8Y7D1
UniRef90_Q674Z0        : --QTGYWVKCCLGCQVDPNTWEPYYSTELCRPAMIFCSKGEGHWVHAQCMDLPEVLLME------------------- : UniRef90_Q674Z0
UniRef90_A0SGJ1        : --QTGYWIKCCLACQVDPNTWEPYYSTELTRPAMIYCSRGEGHWVHAQCMELSENL---------------------- : UniRef90_A0SGJ1
UniRef90_Q4QUY8        : --QTGYWIKCCLTCQIDINTWEPFYSTELTRPAMIFCSRGEGHWVHARCME--------------------------- : UniRef90_Q4QUY8
UniRef90_C0M5I9        : ---TGYWIICCPTCDVDINTWVPFYSTELNKPAMIYCCHGDGHWVHAGGME--------------------------- : UniRef90_C0M5I9
UniRef90_F7J1Y5        : ---AGYWITCCDGCDLNENTWVPYYSTELNKPAMIYCSSDRGHWVHSQCM---------------------------- : UniRef90_F7J1Y5
UniRef90_F7J205        : ---TGYWITCCKDCNVDINTWVPYYSTELNKPAMIYCSKDGGHWVHAPC----------------------------- : UniRef90_F7J205
UniRef90_A1YE04        : --QSGYWSRCCNTCHVDANTWEPFYSTELMRPAMIFCSKGEGHWVHAQCME--------------------------- : UniRef90_A1YE04
UniRef90_Q90XI5        : ---------------------------ELNKPAMIFCSRGEGHWVHAQCMDLSETLLVQLSQENTKYFCVDHMDLVQG : UniRef90_Q90XI5
UniRef90_Q90XI2        : --EEGYWIKCSPTCNMNINIWVPYYSTEFNKPAMIFCSKDAGHWVHAQCM---------------------------- : UniRef90_Q90XI2
UniRef90_T1YT57        : --QTGYWIKCCLTCQVDPNTWDPYYSTELTRPAMIFRSRGEGHWVHAQ------------------------------ : UniRef90_T1YT57
UniRef90_J9WKB7        : ---TGYWITCSASCNVXXXXXXXXXXXXXXXXXXXXXSSGDGHWVHAQCMDLSETMLLRLSEANVKYFCNEHVDLNKG : UniRef90_J9WKB7
UniRef90_F7J1V9        : ----GYWITCCIGCDLDVNTWVPYYSTELNKPAMIYCSGDGGHWV--------------------------------- : UniRef90_F7J1V9
UniRef90_Q6T1G6        : ---TGYWIKCCASCNIDINTWVPYYTTELNKPAMIYCSSGDG------------------------------------ : UniRef90_Q6T1G6
UniRef90_F7J1H7        : --QTGYWITCCHGCDLDVNNWVPYYSIKLKRPAMMYSSGDEG------------------------------------ : UniRef90_F7J1H7

                       : 1---------11--------21--------31--------41--------51--------61--------71------ :
OrigSeq                : SPEFGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNEHVQIARA : OrigSeq

Jnet                   : -----EEEEE-------------HH-------EEEEEE-----EEEEE-----HHHHHHHH----HEEE--------- : Jnet
jhmm                   : -----EEEEE-----------HHHHHHHH--HHHEEE------EEEE------HHHHHHHHHH--HHHH---HHH--- : jhmm
jpssm                  : -----EEEEE--------------E-------EEEEEE----EEEEEE-----HHHHHHH-----EEEE--------- : jpssm

Lupas 14               : ------------------------------------------------------------------------------ : Lupas 14
Lupas 21               : ------------------------------------------------------------------------------ : Lupas 21
Lupas 28               : ------------------------------------------------------------------------------ : Lupas 28

Jnet_25                : ----BBBB-BB--B-B-B-BB--BB-B-B--BBBBBBB---BBBBBB-BB-B---BBB-BB-----BBB--BB-B--- : Jnet_25
Jnet_5                 : ------BB-BB--B-B----------------BBBBB-------B---B-------B--B--------B--------- : Jnet_5
Jnet_0                 : ----------B-------------------------------------B----------------------------- : Jnet_0
Jnet Rel               : 999851687436777667777430102227720489814887178881267744666664012861010367324899 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.