SILENT_MODE BLOCK_FILE jp_NBZhPom.concise.blc MAX_NSEQ 597 MAX_INPUT_LEN 599 OUTPUT_FILE jp_NBZhPom.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 129 586 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 587 129 596 H SPACE SUB_CHARS 1 587 129 596 E SPACE SUB_CHARS 1 587 129 596 - SPACE STRAND 43 590 44 COLOUR_TEXT_REGION 43 590 44 590 51 STRAND 51 590 58 COLOUR_TEXT_REGION 51 590 58 590 51 HELIX 5 590 14 COLOUR_TEXT_REGION 5 590 14 590 50 HELIX 27 590 35 COLOUR_TEXT_REGION 27 590 35 590 50 HELIX 81 590 83 COLOUR_TEXT_REGION 81 590 83 590 50 HELIX 88 590 100 COLOUR_TEXT_REGION 88 590 100 590 50 STRAND 43 595 44 COLOUR_TEXT_REGION 43 595 44 595 51 STRAND 51 595 57 COLOUR_TEXT_REGION 51 595 57 595 51 HELIX 5 595 14 COLOUR_TEXT_REGION 5 595 14 595 50 HELIX 27 595 35 COLOUR_TEXT_REGION 27 595 35 595 50 HELIX 81 595 83 COLOUR_TEXT_REGION 81 595 83 595 50 HELIX 88 595 101 COLOUR_TEXT_REGION 88 595 101 595 50 HELIX 122 595 124 COLOUR_TEXT_REGION 122 595 124 595 50 STRAND 42 596 44 COLOUR_TEXT_REGION 42 596 44 596 51 STRAND 53 596 58 COLOUR_TEXT_REGION 53 596 58 596 51 HELIX 6 596 14 COLOUR_TEXT_REGION 6 596 14 596 50 HELIX 27 596 35 COLOUR_TEXT_REGION 27 596 35 596 50 HELIX 80 596 83 COLOUR_TEXT_REGION 80 596 83 596 50 HELIX 88 596 100 COLOUR_TEXT_REGION 88 596 100 596 50