SILENT_MODE
BLOCK_FILE jp_XUavMsX.concise.blc
MAX_NSEQ 191
MAX_INPUT_LEN 193
OUTPUT_FILE jp_XUavMsX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 131 180   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 181 131 190 H SPACE
SUB_CHARS 1 181 131 190 E SPACE
SUB_CHARS 1 181 131 190 - SPACE
STRAND 3 184 13
COLOUR_TEXT_REGION 3 184 13 184 51
STRAND 17 184 21
COLOUR_TEXT_REGION 17 184 21 184 51
STRAND 43 184 45
COLOUR_TEXT_REGION 43 184 45 184 51
STRAND 73 184 83
COLOUR_TEXT_REGION 73 184 83 184 51
STRAND 88 184 95
COLOUR_TEXT_REGION 88 184 95 184 51
STRAND 104 184 109
COLOUR_TEXT_REGION 104 184 109 184 51
STRAND 124 184 130
COLOUR_TEXT_REGION 124 184 130 184 51
HELIX 25 184 33
COLOUR_TEXT_REGION 25 184 33 184 50
STRAND 3 189 13
COLOUR_TEXT_REGION 3 189 13 189 51
STRAND 17 189 21
COLOUR_TEXT_REGION 17 189 21 189 51
STRAND 44 189 45
COLOUR_TEXT_REGION 44 189 45 189 51
STRAND 73 189 83
COLOUR_TEXT_REGION 73 189 83 189 51
STRAND 88 189 95
COLOUR_TEXT_REGION 88 189 95 189 51
STRAND 104 189 109
COLOUR_TEXT_REGION 104 189 109 189 51
STRAND 124 189 129
COLOUR_TEXT_REGION 124 189 129 189 51
HELIX 25 189 33
COLOUR_TEXT_REGION 25 189 33 189 50
STRAND 3 190 13
COLOUR_TEXT_REGION 3 190 13 190 51
STRAND 17 190 21
COLOUR_TEXT_REGION 17 190 21 190 51
STRAND 43 190 46
COLOUR_TEXT_REGION 43 190 46 190 51
STRAND 64 190 65
COLOUR_TEXT_REGION 64 190 65 190 51
STRAND 73 190 83
COLOUR_TEXT_REGION 73 190 83 190 51
STRAND 88 190 95
COLOUR_TEXT_REGION 88 190 95 190 51
STRAND 104 190 109
COLOUR_TEXT_REGION 104 190 109 190 51
STRAND 124 190 130
COLOUR_TEXT_REGION 124 190 130 190 51
HELIX 25 190 33
COLOUR_TEXT_REGION 25 190 33 190 50