SILENT_MODE BLOCK_FILE jp_JqnNCF9.concise.blc MAX_NSEQ 403 MAX_INPUT_LEN 405 OUTPUT_FILE jp_JqnNCF9.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 452 392 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 393 452 402 H SPACE SUB_CHARS 1 393 452 402 E SPACE SUB_CHARS 1 393 452 402 - SPACE STRAND 9 396 12 COLOUR_TEXT_REGION 9 396 12 396 51 STRAND 20 396 26 COLOUR_TEXT_REGION 20 396 26 396 51 STRAND 33 396 38 COLOUR_TEXT_REGION 33 396 38 396 51 STRAND 52 396 57 COLOUR_TEXT_REGION 52 396 57 396 51 STRAND 95 396 98 COLOUR_TEXT_REGION 95 396 98 396 51 STRAND 105 396 108 COLOUR_TEXT_REGION 105 396 108 396 51 STRAND 113 396 116 COLOUR_TEXT_REGION 113 396 116 396 51 STRAND 123 396 133 COLOUR_TEXT_REGION 123 396 133 396 51 STRAND 153 396 153 COLOUR_TEXT_REGION 153 396 153 396 51 STRAND 166 396 171 COLOUR_TEXT_REGION 166 396 171 396 51 STRAND 181 396 184 COLOUR_TEXT_REGION 181 396 184 396 51 STRAND 194 396 204 COLOUR_TEXT_REGION 194 396 204 396 51 STRAND 211 396 212 COLOUR_TEXT_REGION 211 396 212 396 51 STRAND 236 396 241 COLOUR_TEXT_REGION 236 396 241 396 51 STRAND 250 396 256 COLOUR_TEXT_REGION 250 396 256 396 51 STRAND 264 396 269 COLOUR_TEXT_REGION 264 396 269 396 51 STRAND 277 396 281 COLOUR_TEXT_REGION 277 396 281 396 51 STRAND 292 396 297 COLOUR_TEXT_REGION 292 396 297 396 51 STRAND 306 396 309 COLOUR_TEXT_REGION 306 396 309 396 51 STRAND 322 396 332 COLOUR_TEXT_REGION 322 396 332 396 51 STRAND 360 396 360 COLOUR_TEXT_REGION 360 396 360 396 51 STRAND 373 396 377 COLOUR_TEXT_REGION 373 396 377 396 51 STRAND 386 396 393 COLOUR_TEXT_REGION 386 396 393 396 51 STRAND 405 396 408 COLOUR_TEXT_REGION 405 396 408 396 51 STRAND 420 396 423 COLOUR_TEXT_REGION 420 396 423 396 51 STRAND 434 396 439 COLOUR_TEXT_REGION 434 396 439 396 51 STRAND 444 396 449 COLOUR_TEXT_REGION 444 396 449 396 51 HELIX 359 396 359 COLOUR_TEXT_REGION 359 396 359 396 50 STRAND 9 401 12 COLOUR_TEXT_REGION 9 401 12 401 51 STRAND 20 401 26 COLOUR_TEXT_REGION 20 401 26 401 51 STRAND 33 401 38 COLOUR_TEXT_REGION 33 401 38 401 51 STRAND 51 401 57 COLOUR_TEXT_REGION 51 401 57 401 51 STRAND 94 401 97 COLOUR_TEXT_REGION 94 401 97 401 51 STRAND 106 401 109 COLOUR_TEXT_REGION 106 401 109 401 51 STRAND 123 401 133 COLOUR_TEXT_REGION 123 401 133 401 51 STRAND 153 401 154 COLOUR_TEXT_REGION 153 401 154 401 51 STRAND 165 401 172 COLOUR_TEXT_REGION 165 401 172 401 51 STRAND 181 401 184 COLOUR_TEXT_REGION 181 401 184 401 51 STRAND 194 401 204 COLOUR_TEXT_REGION 194 401 204 401 51 STRAND 235 401 240 COLOUR_TEXT_REGION 235 401 240 401 51 STRAND 250 401 256 COLOUR_TEXT_REGION 250 401 256 401 51 STRAND 264 401 270 COLOUR_TEXT_REGION 264 401 270 401 51 STRAND 278 401 281 COLOUR_TEXT_REGION 278 401 281 401 51 STRAND 292 401 297 COLOUR_TEXT_REGION 292 401 297 401 51 STRAND 306 401 309 COLOUR_TEXT_REGION 306 401 309 401 51 STRAND 321 401 331 COLOUR_TEXT_REGION 321 401 331 401 51 STRAND 345 401 347 COLOUR_TEXT_REGION 345 401 347 401 51 STRAND 359 401 360 COLOUR_TEXT_REGION 359 401 360 401 51 STRAND 373 401 377 COLOUR_TEXT_REGION 373 401 377 401 51 STRAND 386 401 393 COLOUR_TEXT_REGION 386 401 393 401 51 STRAND 405 401 407 COLOUR_TEXT_REGION 405 401 407 401 51 STRAND 420 401 421 COLOUR_TEXT_REGION 420 401 421 401 51 STRAND 434 401 439 COLOUR_TEXT_REGION 434 401 439 401 51 STRAND 444 401 449 COLOUR_TEXT_REGION 444 401 449 401 51 STRAND 9 402 12 COLOUR_TEXT_REGION 9 402 12 402 51 STRAND 21 402 24 COLOUR_TEXT_REGION 21 402 24 402 51 STRAND 34 402 39 COLOUR_TEXT_REGION 34 402 39 402 51 STRAND 53 402 57 COLOUR_TEXT_REGION 53 402 57 402 51 STRAND 86 402 86 COLOUR_TEXT_REGION 86 402 86 402 51 STRAND 95 402 98 COLOUR_TEXT_REGION 95 402 98 402 51 STRAND 104 402 108 COLOUR_TEXT_REGION 104 402 108 402 51 STRAND 112 402 117 COLOUR_TEXT_REGION 112 402 117 402 51 STRAND 128 402 133 COLOUR_TEXT_REGION 128 402 133 402 51 STRAND 153 402 153 COLOUR_TEXT_REGION 153 402 153 402 51 STRAND 167 402 170 COLOUR_TEXT_REGION 167 402 170 402 51 STRAND 181 402 183 COLOUR_TEXT_REGION 181 402 183 402 51 STRAND 195 402 197 COLOUR_TEXT_REGION 195 402 197 402 51 STRAND 203 402 203 COLOUR_TEXT_REGION 203 402 203 402 51 STRAND 211 402 213 COLOUR_TEXT_REGION 211 402 213 402 51 STRAND 236 402 241 COLOUR_TEXT_REGION 236 402 241 402 51 STRAND 251 402 257 COLOUR_TEXT_REGION 251 402 257 402 51 STRAND 266 402 267 COLOUR_TEXT_REGION 266 402 267 402 51 STRAND 276 402 281 COLOUR_TEXT_REGION 276 402 281 402 51 STRAND 292 402 297 COLOUR_TEXT_REGION 292 402 297 402 51 STRAND 306 402 309 COLOUR_TEXT_REGION 306 402 309 402 51 STRAND 323 402 332 COLOUR_TEXT_REGION 323 402 332 402 51 STRAND 373 402 377 COLOUR_TEXT_REGION 373 402 377 402 51 STRAND 386 402 393 COLOUR_TEXT_REGION 386 402 393 402 51 STRAND 405 402 408 COLOUR_TEXT_REGION 405 402 408 402 51 STRAND 419 402 424 COLOUR_TEXT_REGION 419 402 424 402 51 STRAND 434 402 439 COLOUR_TEXT_REGION 434 402 439 402 51 STRAND 444 402 449 COLOUR_TEXT_REGION 444 402 449 402 51 HELIX 358 402 363 COLOUR_TEXT_REGION 358 402 363 402 50