Filename Description -------- ----------- jp_yd7yIQO.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp_yd7yIQO.als Alscript command file. Used to generate PS/PDF outputjp_yd7yIQO.blast.gz PSIBLAST output (compressed) jp_yd7yIQO.coils.csv The output from coils in CSV format jp_yd7yIQO.coilseq.lupas_14 The output from coils using a window length of 14 jp_yd7yIQO.coilseq.lupas_21 The output from coils using a window length of 21 jp_yd7yIQO.coilseq.lupas_28 The output from coils using a window length of 28 jp_yd7yIQO.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp_yd7yIQO.concise.blc A BLC file of the prediction and alignment jp_yd7yIQO.concise.pdf A PDF file of the prediction and alignment jp_yd7yIQO.fasta Input query sequence in FASTA format jp_yd7yIQO.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp_yd7yIQO.hmm The HHMer2 profile of the alignment jp_yd7yIQO.html A HTML file of the prediction and alignment jp_yd7yIQO.input Your raw input jp_yd7yIQO.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp_yd7yIQO.jnet The output from Jnet jp_yd7yIQO.profile PSIBLAST profile jp_yd7yIQO.pssm PSIBLAST PSSM in a format for Jnet jp_yd7yIQO.seq Your sequence jp_yd7yIQO.simple.html The brief HTML output of the query sequence and prediction only jp_yd7yIQO.svg.html A Jalview generated SVG file with summary of the results.