QUERY           : NEKEIKDLYDNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDVNNVGIRGYMYLKGPRGSVMTTNIYLNSSLYRGTKFIIKKYASGNKDNIVRNNDRVYINVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNKCKMNLQDNNGNDIGFIGFHQFNNIAKLVASNWYNRQIERSSRTLGCSWEFIPVDDGWGERPLQ : QUERY 
UniRef90_D2KHS9 : DKTEIETLYHSEPDSTILKDFWGNYLLYNKKYYLLNLLKPNMSVTKNSD----ILNINRQRGIYSKTNIFSNARLYTGVEVIIRKVGSSNTDNFVRKNDTVYINVVDGNSEYQLYADVSTSAVEKTIKLRRISNSNNSNQMIIMDS-----IGDNCTMNFKTNNGNDIGLLGFH----LNNLVASSWYYKNIRNNTRNNGCFWSFISKEHGWQE---- : UniRef90_D2KHS9
UniRef90_B1INP5 : SQSNIEERYKIQSYSEYLKDFWGNPLMYNKEYYMFNAGNKNSYIKLKKDSPVG--EILTRSKYNQNSKYINYRDLYIGEKFIIRRKSNSQNDDIVRKEDYIYLDFFNLNQEWRVYTYKYFKKEEEKLFLAPISDSDEFYNTIQIKEYDEQP-TYSCQLLFKEESTDEIGLIGIHRFYESDYFCISKWYLKEVKRYNLKLGCNWQFIPKDEGWTE---- : UniRef90_B1INP5
UniRef90_P30996 : DKTEIETLYSNEPDPSILKNYWGNYLLYNKKYYLFNLLRKDKYITLNS----GILNINQQRG-VTEGSVFLNYKLYEGVEVIIRKNGPSNTDNFVRKNDLAYINVVDRGVEYRLYADT-KSEKEKIIRTSNLNDS--LGQIIVMDS-----IGNNCTMNFQNNNGSNIGLLGFHSN----NLVASSWYYNNIRRNTSSNGCFWSSISKENGWKE---- : UniRef90_P30996
UniRef90_Q60393 : NATEVSSLYWIQSSTNTLKDFWGNPLRYDTQYYLFNQGMQNIYIKYFS---KASMGETAPRTNFNNAAINYQN-LYLGLRFIIKKASNSNNDNIVREGDYIYLNIDISDESYRVYVLVNSKEIQTQLFLAPINDDPTFYDVLQIK-KYYEKTTYNCQI-LCEKDTKTFGLFGIGKFVKDYYFCISQWYLRRISENKLRLGCNWQFIPVDEGWTE---- : UniRef90_Q60393
UniRef90_P19321 : ---DINIVYEGQILRNVIKDYWGNPLKFDTEYYIINDNYIDRYIAPESNVLVLVQYPD-------------RSKLYTGNPITIKSVSDKNPYSRILNGDNIILHMLYNSRKYMIIRDTDTECSQNCVYALKLQSNLGNYGIGIFSIKNIVSKNKYCSQIFSSFRENTMLLADIYSFKNAYTPVAVTNYETKL----LSTSSFWKFISRDPGWVE---- : UniRef90_P19321
UniRef90_P04958 : NPKEIEKLYTSYLSITFLRDFWGNPLRYDTEYYLIPVASSSKDVQLKN--ITDYMYLNAPSYTNGKLNIYYR-RLYNGLKFIIKRYTPNNEDSFVKSGDFIKLYVSYNNNEHIVGYPKDGNAFNNLDRILRVPGIPLYKKMEAVKLRDLK--TYSVQLKLYDDKNASLGLVGTHQIGNDPNLIASNWYFNHLKD--KILGCDWYFVPTDEGWT----- : UniRef90_P04958
UniRef90_Q00496 : DETEIQTLYSNEPNTNILKDFWGNYLLYDKEYYLLNVLKPNNFIDRRKD---STLSINNIRSTILLAN-----RLYSGIKVKIQRVNSSTNDNLVRKNDQVYINFVAKTHLFPLYADTATTNKEK---TIKISSSGNFNQVVVMNS------VGNCTMNFKNNNGNNIGLLGF----KADTVVASTWYYTHMRDHTNSNGCFWNFISEEHGWQEK--- : UniRef90_Q00496
UniRef90_P18640 : DGKDINILFNSLQYTNVVKDYWGNDLRYNKEYYMVNIDYLNRYMYANS------------RQIVFNTR-RNNNDFNEGYKIIIKRIRGNTNDTRVRGGDILYFDMTINNKAYNLFMYADNHSTEDIYAILREQTKDINDNIIFQIQPMNNTYYYASQIFKSNFNGENI--SGICSIGTYRFRLGGDWYRHNYGNYASLLESTWGFVPVSE-------- : UniRef90_P18640
UniRef90_C6KZT4 : DDKDINILFNSLQYTNVVKDYWGNDLRYDKEYYMINVNYMNRYMSKK------------GNGIVFNTRK-NNNDFNEGYKIIIKRIIGNTNDTRVRGENVLYFNTTIDNKQYSLGMYKPSRNLGTDLVPL-----GALDQPMDEIRKYGSFIIQPCQLFLSSNTTNRIGILSIGSY--SFKLGDDYWFNHEIEHYASLLESTWVFVPASE-------- : UniRef90_C6KZT4
UniRef90_R4NFU3 : NQNEVTELYKIQSYSDYMKDFLGNPLEYNREYYVINAAHKNYYLFKNEDNYTNV--------------YKRNNSLYVGVQWIMQNTSSYTSNNIIRSNDNIWICTRFNNNTSYLHIDASQLEGKYIVAYLSEAEK---SLFRIQKTYNKLGYSG--QILSSEGVQGALAISKLRQYYNFTWIVAKKTINTVIEDSH--FGCNWQFIPIDEGWQDQ--- : UniRef90_R4NFU3
UniRef90_A8R0C3 : ---------------------------------------------------------------------------------------------IVRKEDYIYLDFFNSNREWRVYAYKDFKEEEQKLFLANIYDSNEFYKTIQIKEYDEQP-TYSCQLLFKEESTDEIGLIGIHKFYESDYFCISKWYLKEVKRYNPNLGCNWQFIPKDEGWIE---- : UniRef90_A8R0C3

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151-------161-------171-------181-------191-------201-------211----- :
OrigSeq         : NEKEIKDLYDNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDVNNVGIRGYMYLKGPRGSVMTTNIYLNSSLYRGTKFIIKKYASGNKDNIVRNNDRVYINVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKNDQGITNKCKMNLQDNNGNDIGFIGFHQFNNIAKLVASNWYNRQIERSSRTLGCSWEFIPVDDGWGERPLQ : OrigSeq

Jnet            : ----HHHHH----------------------EEEE---------E-------EEE--------EE--HHH---------EEEEEE-------EEEE---EEEEEEEE---EEEEEEE--------EEEEEE---------EEEEE---------EEEEEEE------EEEEE---------------HHHHHHH---------EEEE----------- : Jnet
jhmm            : ---HHHHHHH------HHH------------EEEE--------EE------EEEE--------HHHHHHHH--------EEEEEE-------EEEE---EEEEEEEE---EEEEEE---------EEEEEE---------EEEEE----------EEEEEEE-----EEEEE---------EE----HHHHHHH---------EEE------------ : jhmm
jpssm           : ----HHHHH---------------------EEEEEE--------------------------EEE---EE-------EEEEEEEE--------EEE---EEEEEEEE---EEEEEEE-------EEEEEEE---------EEEEEE--------EEEEEEE-----EEEEEEE-------------HHHHHHHH--------EEEEE----------- : jpssm

Lupas 14        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ----B--BB-------BBBBBBB--B-B---BBBBBBB---BBB------B--BB-B-----BB--BBBB-B--BB--B-BBB--B-----B-BBB--BBBBBBBBB----BBBBBBB----B--BBBBB-B-----B--BBBBBB---------B-BBB-------BBBBBB--B--B-BBBBB-BBB--B--B---B-B-B-BBB----B------ : Jnet_25
Jnet_5          : ----B------------B-------B-----BBBB--------B-------------------B----------------B-B-----------B-----B-B-B--------B--------------BB----------B--B-----------B-B---------BBBB-B---------BB---B---B--------B-B--B------------ : Jnet_5
Jnet_0          : ----------------------------------------------------------------------------------------------------B-B-B--------------------------------------------------B------------B------------------------------------------------- : Jnet_0
Jnet Rel        : 99800322116777751002466766677616764046777651056777701223677761201011111677775308888853777776155157548999986586489988137887510677761577777775068861477777741888871088861788860577777772232224566452367888751677136777777889 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.