SILENT_MODE BLOCK_FILE jp_qhp85Nf.concise.blc MAX_NSEQ 907 MAX_INPUT_LEN 909 OUTPUT_FILE jp_qhp85Nf.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 274 896 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 897 274 906 H SPACE SUB_CHARS 1 897 274 906 E SPACE SUB_CHARS 1 897 274 906 - SPACE STRAND 4 900 11 COLOUR_TEXT_REGION 4 900 11 900 51 STRAND 38 900 41 COLOUR_TEXT_REGION 38 900 41 900 51 STRAND 79 900 87 COLOUR_TEXT_REGION 79 900 87 900 51 STRAND 93 900 100 COLOUR_TEXT_REGION 93 900 100 900 51 STRAND 105 900 110 COLOUR_TEXT_REGION 105 900 110 900 51 STRAND 139 900 143 COLOUR_TEXT_REGION 139 900 143 900 51 STRAND 147 900 151 COLOUR_TEXT_REGION 147 900 151 900 51 STRAND 172 900 176 COLOUR_TEXT_REGION 172 900 176 900 51 STRAND 202 900 206 COLOUR_TEXT_REGION 202 900 206 900 51 STRAND 217 900 225 COLOUR_TEXT_REGION 217 900 225 900 51 STRAND 231 900 234 COLOUR_TEXT_REGION 231 900 234 900 51 STRAND 240 900 246 COLOUR_TEXT_REGION 240 900 246 900 51 STRAND 268 900 271 COLOUR_TEXT_REGION 268 900 271 900 51 HELIX 17 900 33 COLOUR_TEXT_REGION 17 900 33 900 50 HELIX 55 900 59 COLOUR_TEXT_REGION 55 900 59 900 50 HELIX 63 900 75 COLOUR_TEXT_REGION 63 900 75 900 50 HELIX 160 900 167 COLOUR_TEXT_REGION 160 900 167 900 50 HELIX 186 900 197 COLOUR_TEXT_REGION 186 900 197 900 50 HELIX 248 900 257 COLOUR_TEXT_REGION 248 900 257 900 50 STRAND 4 905 11 COLOUR_TEXT_REGION 4 905 11 905 51 STRAND 38 905 41 COLOUR_TEXT_REGION 38 905 41 905 51 STRAND 79 905 87 COLOUR_TEXT_REGION 79 905 87 905 51 STRAND 93 905 100 COLOUR_TEXT_REGION 93 905 100 905 51 STRAND 106 905 110 COLOUR_TEXT_REGION 106 905 110 905 51 STRAND 139 905 143 COLOUR_TEXT_REGION 139 905 143 905 51 STRAND 147 905 152 COLOUR_TEXT_REGION 147 905 152 905 51 STRAND 171 905 176 COLOUR_TEXT_REGION 171 905 176 905 51 STRAND 202 905 206 COLOUR_TEXT_REGION 202 905 206 905 51 STRAND 217 905 219 COLOUR_TEXT_REGION 217 905 219 905 51 STRAND 222 905 225 COLOUR_TEXT_REGION 222 905 225 905 51 STRAND 231 905 233 COLOUR_TEXT_REGION 231 905 233 905 51 STRAND 240 905 246 COLOUR_TEXT_REGION 240 905 246 905 51 STRAND 270 905 271 COLOUR_TEXT_REGION 270 905 271 905 51 HELIX 17 905 33 COLOUR_TEXT_REGION 17 905 33 905 50 HELIX 54 905 57 COLOUR_TEXT_REGION 54 905 57 905 50 HELIX 64 905 75 COLOUR_TEXT_REGION 64 905 75 905 50 HELIX 159 905 167 COLOUR_TEXT_REGION 159 905 167 905 50 HELIX 185 905 198 COLOUR_TEXT_REGION 185 905 198 905 50 HELIX 248 905 256 COLOUR_TEXT_REGION 248 905 256 905 50 STRAND 4 906 11 COLOUR_TEXT_REGION 4 906 11 906 51 STRAND 38 906 41 COLOUR_TEXT_REGION 38 906 41 906 51 STRAND 79 906 81 COLOUR_TEXT_REGION 79 906 81 906 51 STRAND 86 906 86 COLOUR_TEXT_REGION 86 906 86 906 51 STRAND 94 906 100 COLOUR_TEXT_REGION 94 906 100 906 51 STRAND 105 906 110 COLOUR_TEXT_REGION 105 906 110 906 51 STRAND 112 906 113 COLOUR_TEXT_REGION 112 906 113 906 51 STRAND 138 906 142 COLOUR_TEXT_REGION 138 906 142 906 51 STRAND 146 906 150 COLOUR_TEXT_REGION 146 906 150 906 51 STRAND 172 906 176 COLOUR_TEXT_REGION 172 906 176 906 51 STRAND 202 906 205 COLOUR_TEXT_REGION 202 906 205 906 51 STRAND 217 906 225 COLOUR_TEXT_REGION 217 906 225 906 51 STRAND 231 906 235 COLOUR_TEXT_REGION 231 906 235 906 51 STRAND 240 906 246 COLOUR_TEXT_REGION 240 906 246 906 51 STRAND 268 906 271 COLOUR_TEXT_REGION 268 906 271 906 51 HELIX 17 906 33 COLOUR_TEXT_REGION 17 906 33 906 50 HELIX 42 906 42 COLOUR_TEXT_REGION 42 906 42 906 50 HELIX 55 906 75 COLOUR_TEXT_REGION 55 906 75 906 50 HELIX 165 906 166 COLOUR_TEXT_REGION 165 906 166 906 50 HELIX 248 906 257 COLOUR_TEXT_REGION 248 906 257 906 50