SILENT_MODE
BLOCK_FILE jp_qqeodP1.concise.blc
MAX_NSEQ 299
MAX_INPUT_LEN 301
OUTPUT_FILE jp_qqeodP1.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 75 288   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 289 75 298 H SPACE
SUB_CHARS 1 289 75 298 E SPACE
SUB_CHARS 1 289 75 298 - SPACE
HELIX 3 292 24
COLOUR_TEXT_REGION 3 292 24 292 50
HELIX 36 292 45
COLOUR_TEXT_REGION 36 292 45 292 50
HELIX 56 292 69
COLOUR_TEXT_REGION 56 292 69 292 50
HELIX 3 297 24
COLOUR_TEXT_REGION 3 297 24 297 50
HELIX 36 297 45
COLOUR_TEXT_REGION 36 297 45 297 50
HELIX 56 297 69
COLOUR_TEXT_REGION 56 297 69 297 50
STRAND 48 298 50
COLOUR_TEXT_REGION 48 298 50 298 51
HELIX 3 298 25
COLOUR_TEXT_REGION 3 298 25 298 50
HELIX 35 298 45
COLOUR_TEXT_REGION 35 298 45 298 50
HELIX 56 298 69
COLOUR_TEXT_REGION 56 298 69 298 50