SILENT_MODE BLOCK_FILE jp_8N7NFsd.concise.blc MAX_NSEQ 758 MAX_INPUT_LEN 760 OUTPUT_FILE jp_8N7NFsd.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 172 747 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 748 172 757 H SPACE SUB_CHARS 1 748 172 757 E SPACE SUB_CHARS 1 748 172 757 - SPACE STRAND 4 751 11 COLOUR_TEXT_REGION 4 751 11 751 51 STRAND 17 751 23 COLOUR_TEXT_REGION 17 751 23 751 51 STRAND 61 751 63 COLOUR_TEXT_REGION 61 751 63 751 51 STRAND 103 751 106 COLOUR_TEXT_REGION 103 751 106 751 51 STRAND 119 751 121 COLOUR_TEXT_REGION 119 751 121 751 51 STRAND 134 751 140 COLOUR_TEXT_REGION 134 751 140 751 51 STRAND 160 751 168 COLOUR_TEXT_REGION 160 751 168 751 51 HELIX 29 751 39 COLOUR_TEXT_REGION 29 751 39 751 50 HELIX 143 751 151 COLOUR_TEXT_REGION 143 751 151 751 50 STRAND 4 756 11 COLOUR_TEXT_REGION 4 756 11 756 51 STRAND 17 756 23 COLOUR_TEXT_REGION 17 756 23 756 51 STRAND 58 756 63 COLOUR_TEXT_REGION 58 756 63 756 51 STRAND 103 756 106 COLOUR_TEXT_REGION 103 756 106 756 51 STRAND 118 756 122 COLOUR_TEXT_REGION 118 756 122 756 51 STRAND 134 756 140 COLOUR_TEXT_REGION 134 756 140 756 51 STRAND 160 756 161 COLOUR_TEXT_REGION 160 756 161 756 51 STRAND 164 756 168 COLOUR_TEXT_REGION 164 756 168 756 51 HELIX 29 756 39 COLOUR_TEXT_REGION 29 756 39 756 50 HELIX 143 756 150 COLOUR_TEXT_REGION 143 756 150 756 50 STRAND 4 757 11 COLOUR_TEXT_REGION 4 757 11 757 51 STRAND 18 757 23 COLOUR_TEXT_REGION 18 757 23 757 51 STRAND 103 757 106 COLOUR_TEXT_REGION 103 757 106 757 51 STRAND 133 757 140 COLOUR_TEXT_REGION 133 757 140 757 51 STRAND 161 757 169 COLOUR_TEXT_REGION 161 757 169 757 51 HELIX 27 757 39 COLOUR_TEXT_REGION 27 757 39 757 50 HELIX 143 757 151 COLOUR_TEXT_REGION 143 757 151 757 50