SILENT_MODE BLOCK_FILE jp_a5XZVaL.concise.blc MAX_NSEQ 162 MAX_INPUT_LEN 164 OUTPUT_FILE jp_a5XZVaL.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 273 151 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 152 273 161 H SPACE SUB_CHARS 1 152 273 161 E SPACE SUB_CHARS 1 152 273 161 - SPACE STRAND 8 155 10 COLOUR_TEXT_REGION 8 155 10 155 51 STRAND 16 155 19 COLOUR_TEXT_REGION 16 155 19 155 51 STRAND 61 155 65 COLOUR_TEXT_REGION 61 155 65 155 51 STRAND 160 155 165 COLOUR_TEXT_REGION 160 155 165 155 51 STRAND 195 155 198 COLOUR_TEXT_REGION 195 155 198 155 51 HELIX 20 155 20 COLOUR_TEXT_REGION 20 155 20 155 50 HELIX 29 155 53 COLOUR_TEXT_REGION 29 155 53 155 50 HELIX 85 155 110 COLOUR_TEXT_REGION 85 155 110 155 50 HELIX 116 155 137 COLOUR_TEXT_REGION 116 155 137 155 50 HELIX 154 155 159 COLOUR_TEXT_REGION 154 155 159 155 50 HELIX 171 155 194 COLOUR_TEXT_REGION 171 155 194 155 50 HELIX 212 155 213 COLOUR_TEXT_REGION 212 155 213 155 50 HELIX 215 155 222 COLOUR_TEXT_REGION 215 155 222 155 50 HELIX 226 155 250 COLOUR_TEXT_REGION 226 155 250 155 50 HELIX 260 155 266 COLOUR_TEXT_REGION 260 155 266 155 50 STRAND 15 160 16 COLOUR_TEXT_REGION 15 160 16 160 51 STRAND 61 160 66 COLOUR_TEXT_REGION 61 160 66 160 51 STRAND 150 160 150 COLOUR_TEXT_REGION 150 160 150 160 51 STRAND 160 160 165 COLOUR_TEXT_REGION 160 160 165 160 51 HELIX 6 160 10 COLOUR_TEXT_REGION 6 160 10 160 50 HELIX 17 160 23 COLOUR_TEXT_REGION 17 160 23 160 50 HELIX 28 160 55 COLOUR_TEXT_REGION 28 160 55 160 50 HELIX 84 160 110 COLOUR_TEXT_REGION 84 160 110 160 50 HELIX 116 160 138 COLOUR_TEXT_REGION 116 160 138 160 50 HELIX 151 160 159 COLOUR_TEXT_REGION 151 160 159 160 50 HELIX 171 160 198 COLOUR_TEXT_REGION 171 160 198 160 50 HELIX 211 160 223 COLOUR_TEXT_REGION 211 160 223 160 50 HELIX 226 160 251 COLOUR_TEXT_REGION 226 160 251 160 50 HELIX 259 160 267 COLOUR_TEXT_REGION 259 160 267 160 50 STRAND 8 161 10 COLOUR_TEXT_REGION 8 161 10 161 51 STRAND 16 161 20 COLOUR_TEXT_REGION 16 161 20 161 51 STRAND 62 161 64 COLOUR_TEXT_REGION 62 161 64 161 51 STRAND 85 161 88 COLOUR_TEXT_REGION 85 161 88 161 51 STRAND 116 161 119 COLOUR_TEXT_REGION 116 161 119 161 51 STRAND 194 161 198 COLOUR_TEXT_REGION 194 161 198 161 51 HELIX 29 161 51 COLOUR_TEXT_REGION 29 161 51 161 50 HELIX 89 161 110 COLOUR_TEXT_REGION 89 161 110 161 50 HELIX 120 161 128 COLOUR_TEXT_REGION 120 161 128 161 50 HELIX 164 161 168 COLOUR_TEXT_REGION 164 161 168 161 50 HELIX 171 161 190 COLOUR_TEXT_REGION 171 161 190 161 50 HELIX 216 161 221 COLOUR_TEXT_REGION 216 161 221 161 50 HELIX 226 161 248 COLOUR_TEXT_REGION 226 161 248 161 50