SILENT_MODE
BLOCK_FILE jp_gF3TlrX.concise.blc
MAX_NSEQ 89
MAX_INPUT_LEN 91
OUTPUT_FILE jp_gF3TlrX.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 144 78   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 79 144 88 H SPACE
SUB_CHARS 1 79 144 88 E SPACE
SUB_CHARS 1 79 144 88 - SPACE
STRAND 10 82 13
COLOUR_TEXT_REGION 10 82 13 82 51
STRAND 101 82 104
COLOUR_TEXT_REGION 101 82 104 82 51
HELIX 17 82 28
COLOUR_TEXT_REGION 17 82 28 82 50
HELIX 35 82 42
COLOUR_TEXT_REGION 35 82 42 82 50
HELIX 47 82 58
COLOUR_TEXT_REGION 47 82 58 82 50
HELIX 64 82 80
COLOUR_TEXT_REGION 64 82 80 82 50
HELIX 109 82 116
COLOUR_TEXT_REGION 109 82 116 82 50
HELIX 125 82 141
COLOUR_TEXT_REGION 125 82 141 82 50
STRAND 3 87 4
COLOUR_TEXT_REGION 3 87 4 87 51
STRAND 10 87 13
COLOUR_TEXT_REGION 10 87 13 87 51
STRAND 101 87 104
COLOUR_TEXT_REGION 101 87 104 87 51
HELIX 16 87 27
COLOUR_TEXT_REGION 16 87 27 87 50
HELIX 34 87 43
COLOUR_TEXT_REGION 34 87 43 87 50
HELIX 47 87 58
COLOUR_TEXT_REGION 47 87 58 87 50
HELIX 63 87 81
COLOUR_TEXT_REGION 63 87 81 87 50
HELIX 109 87 117
COLOUR_TEXT_REGION 109 87 117 87 50
HELIX 125 87 141
COLOUR_TEXT_REGION 125 87 141 87 50
STRAND 9 88 13
COLOUR_TEXT_REGION 9 88 13 88 51
STRAND 37 88 41
COLOUR_TEXT_REGION 37 88 41 88 51
HELIX 19 88 28
COLOUR_TEXT_REGION 19 88 28 88 50
HELIX 48 88 58
COLOUR_TEXT_REGION 48 88 58 88 50
HELIX 71 88 79
COLOUR_TEXT_REGION 71 88 79 88 50
HELIX 109 88 114
COLOUR_TEXT_REGION 109 88 114 88 50
HELIX 126 88 141
COLOUR_TEXT_REGION 126 88 141 88 50