SILENT_MODE BLOCK_FILE jp_uBJ5uFM.concise.blc MAX_NSEQ 683 MAX_INPUT_LEN 685 OUTPUT_FILE jp_uBJ5uFM.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 209 672 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 673 209 682 H SPACE SUB_CHARS 1 673 209 682 E SPACE SUB_CHARS 1 673 209 682 - SPACE STRAND 29 676 41 COLOUR_TEXT_REGION 29 676 41 676 51 STRAND 50 676 61 COLOUR_TEXT_REGION 50 676 61 676 51 STRAND 67 676 67 COLOUR_TEXT_REGION 67 676 67 676 51 STRAND 77 676 80 COLOUR_TEXT_REGION 77 676 80 676 51 STRAND 92 676 93 COLOUR_TEXT_REGION 92 676 93 676 51 STRAND 107 676 110 COLOUR_TEXT_REGION 107 676 110 676 51 STRAND 115 676 119 COLOUR_TEXT_REGION 115 676 119 676 51 STRAND 124 676 126 COLOUR_TEXT_REGION 124 676 126 676 51 STRAND 140 676 148 COLOUR_TEXT_REGION 140 676 148 676 51 STRAND 155 676 159 COLOUR_TEXT_REGION 155 676 159 676 51 STRAND 176 676 188 COLOUR_TEXT_REGION 176 676 188 676 51 STRAND 196 676 207 COLOUR_TEXT_REGION 196 676 207 676 51 HELIX 5 676 16 COLOUR_TEXT_REGION 5 676 16 676 50 STRAND 29 681 41 COLOUR_TEXT_REGION 29 681 41 681 51 STRAND 50 681 62 COLOUR_TEXT_REGION 50 681 62 681 51 STRAND 67 681 68 COLOUR_TEXT_REGION 67 681 68 681 51 STRAND 77 681 81 COLOUR_TEXT_REGION 77 681 81 681 51 STRAND 91 681 94 COLOUR_TEXT_REGION 91 681 94 681 51 STRAND 107 681 111 COLOUR_TEXT_REGION 107 681 111 681 51 STRAND 115 681 119 COLOUR_TEXT_REGION 115 681 119 681 51 STRAND 123 681 127 COLOUR_TEXT_REGION 123 681 127 681 51 STRAND 139 681 148 COLOUR_TEXT_REGION 139 681 148 681 51 STRAND 154 681 159 COLOUR_TEXT_REGION 154 681 159 681 51 STRAND 175 681 188 COLOUR_TEXT_REGION 175 681 188 681 51 STRAND 196 681 207 COLOUR_TEXT_REGION 196 681 207 681 51 HELIX 5 681 15 COLOUR_TEXT_REGION 5 681 15 681 50 STRAND 29 682 40 COLOUR_TEXT_REGION 29 682 40 682 51 STRAND 76 682 79 COLOUR_TEXT_REGION 76 682 79 682 51 STRAND 106 682 110 COLOUR_TEXT_REGION 106 682 110 682 51 STRAND 116 682 118 COLOUR_TEXT_REGION 116 682 118 682 51 STRAND 141 682 146 COLOUR_TEXT_REGION 141 682 146 682 51 STRAND 157 682 158 COLOUR_TEXT_REGION 157 682 158 682 51 STRAND 183 682 188 COLOUR_TEXT_REGION 183 682 188 682 51 STRAND 196 682 207 COLOUR_TEXT_REGION 196 682 207 682 51 HELIX 5 682 16 COLOUR_TEXT_REGION 5 682 16 682 50 HELIX 50 682 60 COLOUR_TEXT_REGION 50 682 60 682 50