SILENT_MODE BLOCK_FILE jp_sx1ZIrb.concise.blc MAX_NSEQ 806 MAX_INPUT_LEN 808 OUTPUT_FILE jp_sx1ZIrb.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 248 795 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 796 248 805 H SPACE SUB_CHARS 1 796 248 805 E SPACE SUB_CHARS 1 796 248 805 - SPACE STRAND 3 799 6 COLOUR_TEXT_REGION 3 799 6 799 51 STRAND 29 799 33 COLOUR_TEXT_REGION 29 799 33 799 51 STRAND 45 799 45 COLOUR_TEXT_REGION 45 799 45 799 51 STRAND 51 799 55 COLOUR_TEXT_REGION 51 799 55 799 51 STRAND 61 799 64 COLOUR_TEXT_REGION 61 799 64 799 51 STRAND 86 799 90 COLOUR_TEXT_REGION 86 799 90 799 51 STRAND 121 799 125 COLOUR_TEXT_REGION 121 799 125 799 51 STRAND 158 799 162 COLOUR_TEXT_REGION 158 799 162 799 51 STRAND 174 799 178 COLOUR_TEXT_REGION 174 799 178 799 51 STRAND 188 799 192 COLOUR_TEXT_REGION 188 799 192 799 51 STRAND 198 799 202 COLOUR_TEXT_REGION 198 799 202 799 51 STRAND 225 799 230 COLOUR_TEXT_REGION 225 799 230 799 51 HELIX 14 799 25 COLOUR_TEXT_REGION 14 799 25 799 50 HELIX 69 799 78 COLOUR_TEXT_REGION 69 799 78 799 50 HELIX 102 799 117 COLOUR_TEXT_REGION 102 799 117 799 50 HELIX 135 799 150 COLOUR_TEXT_REGION 135 799 150 799 50 HELIX 216 799 221 COLOUR_TEXT_REGION 216 799 221 799 50 HELIX 237 799 246 COLOUR_TEXT_REGION 237 799 246 799 50 STRAND 3 804 6 COLOUR_TEXT_REGION 3 804 6 804 51 STRAND 29 804 33 COLOUR_TEXT_REGION 29 804 33 804 51 STRAND 41 804 42 COLOUR_TEXT_REGION 41 804 42 804 51 STRAND 45 804 46 COLOUR_TEXT_REGION 45 804 46 804 51 STRAND 51 804 55 COLOUR_TEXT_REGION 51 804 55 804 51 STRAND 61 804 64 COLOUR_TEXT_REGION 61 804 64 804 51 STRAND 87 804 90 COLOUR_TEXT_REGION 87 804 90 804 51 STRAND 121 804 125 COLOUR_TEXT_REGION 121 804 125 804 51 STRAND 158 804 162 COLOUR_TEXT_REGION 158 804 162 804 51 STRAND 174 804 178 COLOUR_TEXT_REGION 174 804 178 804 51 STRAND 188 804 192 COLOUR_TEXT_REGION 188 804 192 804 51 STRAND 198 804 202 COLOUR_TEXT_REGION 198 804 202 804 51 STRAND 225 804 230 COLOUR_TEXT_REGION 225 804 230 804 51 HELIX 14 804 25 COLOUR_TEXT_REGION 14 804 25 804 50 HELIX 68 804 77 COLOUR_TEXT_REGION 68 804 77 804 50 HELIX 101 804 117 COLOUR_TEXT_REGION 101 804 117 804 50 HELIX 136 804 150 COLOUR_TEXT_REGION 136 804 150 804 50 HELIX 216 804 221 COLOUR_TEXT_REGION 216 804 221 804 50 HELIX 237 804 246 COLOUR_TEXT_REGION 237 804 246 804 50 STRAND 3 805 6 COLOUR_TEXT_REGION 3 805 6 805 51 STRAND 29 805 33 COLOUR_TEXT_REGION 29 805 33 805 51 STRAND 52 805 55 COLOUR_TEXT_REGION 52 805 55 805 51 STRAND 61 805 63 COLOUR_TEXT_REGION 61 805 63 805 51 STRAND 86 805 90 COLOUR_TEXT_REGION 86 805 90 805 51 STRAND 122 805 124 COLOUR_TEXT_REGION 122 805 124 805 51 STRAND 157 805 162 COLOUR_TEXT_REGION 157 805 162 805 51 STRAND 174 805 178 COLOUR_TEXT_REGION 174 805 178 805 51 STRAND 189 805 192 COLOUR_TEXT_REGION 189 805 192 805 51 STRAND 198 805 202 COLOUR_TEXT_REGION 198 805 202 805 51 STRAND 225 805 231 COLOUR_TEXT_REGION 225 805 231 805 51 HELIX 14 805 25 COLOUR_TEXT_REGION 14 805 25 805 50 HELIX 70 805 79 COLOUR_TEXT_REGION 70 805 79 805 50 HELIX 110 805 117 COLOUR_TEXT_REGION 110 805 117 805 50 HELIX 135 805 150 COLOUR_TEXT_REGION 135 805 150 805 50 HELIX 216 805 221 COLOUR_TEXT_REGION 216 805 221 805 50 HELIX 237 805 246 COLOUR_TEXT_REGION 237 805 246 805 50