SILENT_MODE
BLOCK_FILE jp_dYtyD9E.concise.blc
MAX_NSEQ 1022
MAX_INPUT_LEN 1024
OUTPUT_FILE jp_dYtyD9E.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 153 1011   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 1012 153 1021 H SPACE
SUB_CHARS 1 1012 153 1021 E SPACE
SUB_CHARS 1 1012 153 1021 - SPACE
STRAND 3 1015 9
COLOUR_TEXT_REGION 3 1015 9 1015 51
STRAND 14 1015 23
COLOUR_TEXT_REGION 14 1015 23 1015 51
STRAND 28 1015 36
COLOUR_TEXT_REGION 28 1015 36 1015 51
STRAND 43 1015 48
COLOUR_TEXT_REGION 43 1015 48 1015 51
STRAND 87 1015 89
COLOUR_TEXT_REGION 87 1015 89 1015 51
STRAND 94 1015 100
COLOUR_TEXT_REGION 94 1015 100 1015 51
STRAND 104 1015 106
COLOUR_TEXT_REGION 104 1015 106 1015 51
STRAND 115 1015 120
COLOUR_TEXT_REGION 115 1015 120 1015 51
STRAND 144 1015 151
COLOUR_TEXT_REGION 144 1015 151 1015 51
STRAND 3 1020 9
COLOUR_TEXT_REGION 3 1020 9 1020 51
STRAND 14 1020 23
COLOUR_TEXT_REGION 14 1020 23 1020 51
STRAND 28 1020 36
COLOUR_TEXT_REGION 28 1020 36 1020 51
STRAND 43 1020 49
COLOUR_TEXT_REGION 43 1020 49 1020 51
STRAND 87 1020 89
COLOUR_TEXT_REGION 87 1020 89 1020 51
STRAND 94 1020 100
COLOUR_TEXT_REGION 94 1020 100 1020 51
STRAND 104 1020 106
COLOUR_TEXT_REGION 104 1020 106 1020 51
STRAND 115 1020 120
COLOUR_TEXT_REGION 115 1020 120 1020 51
STRAND 144 1020 151
COLOUR_TEXT_REGION 144 1020 151 1020 51
STRAND 3 1021 9
COLOUR_TEXT_REGION 3 1021 9 1021 51
STRAND 14 1021 22
COLOUR_TEXT_REGION 14 1021 22 1021 51
STRAND 28 1021 35
COLOUR_TEXT_REGION 28 1021 35 1021 51
STRAND 43 1021 47
COLOUR_TEXT_REGION 43 1021 47 1021 51
STRAND 87 1021 89
COLOUR_TEXT_REGION 87 1021 89 1021 51
STRAND 94 1021 100
COLOUR_TEXT_REGION 94 1021 100 1021 51
STRAND 104 1021 105
COLOUR_TEXT_REGION 104 1021 105 1021 51
STRAND 115 1021 120
COLOUR_TEXT_REGION 115 1021 120 1021 51
STRAND 144 1021 150
COLOUR_TEXT_REGION 144 1021 150 1021 51