SILENT_MODE BLOCK_FILE jp_eBSx_fq.concise.blc MAX_NSEQ 955 MAX_INPUT_LEN 957 OUTPUT_FILE jp_eBSx_fq.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 204 944 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 945 204 954 H SPACE SUB_CHARS 1 945 204 954 E SPACE SUB_CHARS 1 945 204 954 - SPACE STRAND 13 948 17 COLOUR_TEXT_REGION 13 948 17 948 51 STRAND 60 948 66 COLOUR_TEXT_REGION 60 948 66 948 51 STRAND 80 948 84 COLOUR_TEXT_REGION 80 948 84 948 51 STRAND 134 948 138 COLOUR_TEXT_REGION 134 948 138 948 51 STRAND 144 948 148 COLOUR_TEXT_REGION 144 948 148 948 51 STRAND 153 948 158 COLOUR_TEXT_REGION 153 948 158 948 51 STRAND 165 948 167 COLOUR_TEXT_REGION 165 948 167 948 51 HELIX 2 948 7 COLOUR_TEXT_REGION 2 948 7 948 50 HELIX 23 948 36 COLOUR_TEXT_REGION 23 948 36 948 50 HELIX 98 948 108 COLOUR_TEXT_REGION 98 948 108 948 50 HELIX 122 948 128 COLOUR_TEXT_REGION 122 948 128 948 50 HELIX 173 948 189 COLOUR_TEXT_REGION 173 948 189 948 50 HELIX 193 948 201 COLOUR_TEXT_REGION 193 948 201 948 50 STRAND 13 953 17 COLOUR_TEXT_REGION 13 953 17 953 51 STRAND 60 953 66 COLOUR_TEXT_REGION 60 953 66 953 51 STRAND 73 953 73 COLOUR_TEXT_REGION 73 953 73 953 51 STRAND 80 953 84 COLOUR_TEXT_REGION 80 953 84 953 51 STRAND 115 953 118 COLOUR_TEXT_REGION 115 953 118 953 51 STRAND 134 953 138 COLOUR_TEXT_REGION 134 953 138 953 51 STRAND 144 953 148 COLOUR_TEXT_REGION 144 953 148 953 51 STRAND 153 953 158 COLOUR_TEXT_REGION 153 953 158 953 51 STRAND 165 953 168 COLOUR_TEXT_REGION 165 953 168 953 51 HELIX 0 953 8 COLOUR_TEXT_REGION 0 953 8 953 50 HELIX 23 953 35 COLOUR_TEXT_REGION 23 953 35 953 50 HELIX 88 953 91 COLOUR_TEXT_REGION 88 953 91 953 50 HELIX 98 953 108 COLOUR_TEXT_REGION 98 953 108 953 50 HELIX 122 953 128 COLOUR_TEXT_REGION 122 953 128 953 50 HELIX 173 953 189 COLOUR_TEXT_REGION 173 953 189 953 50 HELIX 193 953 202 COLOUR_TEXT_REGION 193 953 202 953 50 STRAND 13 954 17 COLOUR_TEXT_REGION 13 954 17 954 51 STRAND 81 954 83 COLOUR_TEXT_REGION 81 954 83 954 51 STRAND 134 954 137 COLOUR_TEXT_REGION 134 954 137 954 51 STRAND 144 954 148 COLOUR_TEXT_REGION 144 954 148 954 51 STRAND 152 954 159 COLOUR_TEXT_REGION 152 954 159 954 51 STRAND 165 954 166 COLOUR_TEXT_REGION 165 954 166 954 51 HELIX 3 954 6 COLOUR_TEXT_REGION 3 954 6 954 50 HELIX 25 954 36 COLOUR_TEXT_REGION 25 954 36 954 50 HELIX 58 954 66 COLOUR_TEXT_REGION 58 954 66 954 50 HELIX 74 954 74 COLOUR_TEXT_REGION 74 954 74 954 50 HELIX 98 954 108 COLOUR_TEXT_REGION 98 954 108 954 50 HELIX 122 954 128 COLOUR_TEXT_REGION 122 954 128 954 50 HELIX 173 954 188 COLOUR_TEXT_REGION 173 954 188 954 50 HELIX 193 954 201 COLOUR_TEXT_REGION 193 954 201 954 50