SILENT_MODE
BLOCK_FILE jp_NpwEput.concise.blc
MAX_NSEQ 877
MAX_INPUT_LEN 879
OUTPUT_FILE jp_NpwEput.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 66 866   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 867 66 876 H SPACE
SUB_CHARS 1 867 66 876 E SPACE
SUB_CHARS 1 867 66 876 - SPACE
HELIX 4 870 12
COLOUR_TEXT_REGION 4 870 12 870 50
HELIX 17 870 24
COLOUR_TEXT_REGION 17 870 24 870 50
HELIX 28 870 35
COLOUR_TEXT_REGION 28 870 35 870 50
HELIX 43 870 52
COLOUR_TEXT_REGION 43 870 52 870 50
HELIX 58 870 59
COLOUR_TEXT_REGION 58 870 59 870 50
HELIX 4 875 12
COLOUR_TEXT_REGION 4 875 12 875 50
HELIX 17 875 24
COLOUR_TEXT_REGION 17 875 24 875 50
HELIX 28 875 33
COLOUR_TEXT_REGION 28 875 33 875 50
HELIX 43 875 52
COLOUR_TEXT_REGION 43 875 52 875 50
HELIX 58 875 59
COLOUR_TEXT_REGION 58 875 59 875 50
HELIX 3 876 12
COLOUR_TEXT_REGION 3 876 12 876 50
HELIX 17 876 24
COLOUR_TEXT_REGION 17 876 24 876 50
HELIX 28 876 36
COLOUR_TEXT_REGION 28 876 36 876 50
HELIX 43 876 52
COLOUR_TEXT_REGION 43 876 52 876 50
HELIX 57 876 60
COLOUR_TEXT_REGION 57 876 60 876 50