SILENT_MODE
BLOCK_FILE jp_a2XHApN.concise.blc
MAX_NSEQ 757
MAX_INPUT_LEN 759
OUTPUT_FILE jp_a2XHApN.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 168 746   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 747 168 756 H SPACE
SUB_CHARS 1 747 168 756 E SPACE
SUB_CHARS 1 747 168 756 - SPACE
STRAND 57 750 59
COLOUR_TEXT_REGION 57 750 59 750 51
HELIX 3 750 24
COLOUR_TEXT_REGION 3 750 24 750 50
HELIX 29 750 40
COLOUR_TEXT_REGION 29 750 40 750 50
HELIX 68 750 81
COLOUR_TEXT_REGION 68 750 81 750 50
HELIX 92 750 112
COLOUR_TEXT_REGION 92 750 112 750 50
HELIX 116 750 166
COLOUR_TEXT_REGION 116 750 166 750 50
STRAND 57 755 60
COLOUR_TEXT_REGION 57 755 60 755 51
HELIX 3 755 25
COLOUR_TEXT_REGION 3 755 25 755 50
HELIX 29 755 40
COLOUR_TEXT_REGION 29 755 40 755 50
HELIX 69 755 81
COLOUR_TEXT_REGION 69 755 81 755 50
HELIX 92 755 112
COLOUR_TEXT_REGION 92 755 112 755 50
HELIX 116 755 148
COLOUR_TEXT_REGION 116 755 148 755 50
HELIX 152 755 166
COLOUR_TEXT_REGION 152 755 166 755 50
HELIX 4 756 19
COLOUR_TEXT_REGION 4 756 19 756 50
HELIX 30 756 39
COLOUR_TEXT_REGION 30 756 39 756 50
HELIX 67 756 81
COLOUR_TEXT_REGION 67 756 81 756 50
HELIX 92 756 112
COLOUR_TEXT_REGION 92 756 112 756 50
HELIX 116 756 165
COLOUR_TEXT_REGION 116 756 165 756 50