SILENT_MODE BLOCK_FILE jp_sFJJTpN.concise.blc MAX_NSEQ 792 MAX_INPUT_LEN 794 OUTPUT_FILE jp_sFJJTpN.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 220 781 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 782 220 791 H SPACE SUB_CHARS 1 782 220 791 E SPACE SUB_CHARS 1 782 220 791 - SPACE STRAND 106 785 110 COLOUR_TEXT_REGION 106 785 110 785 51 STRAND 112 785 115 COLOUR_TEXT_REGION 112 785 115 785 51 STRAND 133 785 138 COLOUR_TEXT_REGION 133 785 138 785 51 STRAND 146 785 152 COLOUR_TEXT_REGION 146 785 152 785 51 STRAND 163 785 171 COLOUR_TEXT_REGION 163 785 171 785 51 STRAND 181 785 186 COLOUR_TEXT_REGION 181 785 186 785 51 STRAND 198 785 203 COLOUR_TEXT_REGION 198 785 203 785 51 HELIX 26 785 41 COLOUR_TEXT_REGION 26 785 41 785 50 HELIX 52 785 54 COLOUR_TEXT_REGION 52 785 54 785 50 HELIX 70 785 79 COLOUR_TEXT_REGION 70 785 79 785 50 HELIX 120 785 128 COLOUR_TEXT_REGION 120 785 128 785 50 STRAND 106 790 109 COLOUR_TEXT_REGION 106 790 109 790 51 STRAND 112 790 114 COLOUR_TEXT_REGION 112 790 114 790 51 STRAND 133 790 138 COLOUR_TEXT_REGION 133 790 138 790 51 STRAND 149 790 152 COLOUR_TEXT_REGION 149 790 152 790 51 STRAND 163 790 170 COLOUR_TEXT_REGION 163 790 170 790 51 STRAND 182 790 186 COLOUR_TEXT_REGION 182 790 186 790 51 STRAND 198 790 203 COLOUR_TEXT_REGION 198 790 203 790 51 STRAND 217 790 219 COLOUR_TEXT_REGION 217 790 219 790 51 HELIX 26 790 41 COLOUR_TEXT_REGION 26 790 41 790 50 HELIX 50 790 55 COLOUR_TEXT_REGION 50 790 55 790 50 HELIX 70 790 79 COLOUR_TEXT_REGION 70 790 79 790 50 HELIX 120 790 128 COLOUR_TEXT_REGION 120 790 128 790 50 STRAND 52 791 54 COLOUR_TEXT_REGION 52 791 54 791 51 STRAND 106 791 115 COLOUR_TEXT_REGION 106 791 115 791 51 STRAND 133 791 138 COLOUR_TEXT_REGION 133 791 138 791 51 STRAND 145 791 151 COLOUR_TEXT_REGION 145 791 151 791 51 STRAND 163 791 171 COLOUR_TEXT_REGION 163 791 171 791 51 STRAND 181 791 187 COLOUR_TEXT_REGION 181 791 187 791 51 STRAND 198 791 203 COLOUR_TEXT_REGION 198 791 203 791 51 HELIX 25 791 41 COLOUR_TEXT_REGION 25 791 41 791 50 HELIX 71 791 79 COLOUR_TEXT_REGION 71 791 79 791 50 HELIX 120 791 128 COLOUR_TEXT_REGION 120 791 128 791 50