SILENT_MODE
BLOCK_FILE jp_bxaSPhz.concise.blc
MAX_NSEQ 821
MAX_INPUT_LEN 823
OUTPUT_FILE jp_bxaSPhz.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 130 810   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 811 130 820 H SPACE
SUB_CHARS 1 811 130 820 E SPACE
SUB_CHARS 1 811 130 820 - SPACE
STRAND 4 814 9
COLOUR_TEXT_REGION 4 814 9 814 51
STRAND 33 814 35
COLOUR_TEXT_REGION 33 814 35 814 51
STRAND 52 814 56
COLOUR_TEXT_REGION 52 814 56 814 51
STRAND 76 814 80
COLOUR_TEXT_REGION 76 814 80 814 51
STRAND 108 814 109
COLOUR_TEXT_REGION 108 814 109 814 51
HELIX 15 814 30
COLOUR_TEXT_REGION 15 814 30 814 50
HELIX 38 814 47
COLOUR_TEXT_REGION 38 814 47 814 50
HELIX 63 814 71
COLOUR_TEXT_REGION 63 814 71 814 50
HELIX 93 814 103
COLOUR_TEXT_REGION 93 814 103 814 50
HELIX 111 814 126
COLOUR_TEXT_REGION 111 814 126 814 50
STRAND 4 819 10
COLOUR_TEXT_REGION 4 819 10 819 51
STRAND 33 819 35
COLOUR_TEXT_REGION 33 819 35 819 51
STRAND 52 819 56
COLOUR_TEXT_REGION 52 819 56 819 51
STRAND 75 819 80
COLOUR_TEXT_REGION 75 819 80 819 51
STRAND 108 819 110
COLOUR_TEXT_REGION 108 819 110 819 51
HELIX 15 819 30
COLOUR_TEXT_REGION 15 819 30 819 50
HELIX 38 819 46
COLOUR_TEXT_REGION 38 819 46 819 50
HELIX 64 819 71
COLOUR_TEXT_REGION 64 819 71 819 50
HELIX 93 819 103
COLOUR_TEXT_REGION 93 819 103 819 50
HELIX 111 819 126
COLOUR_TEXT_REGION 111 819 126 819 50
STRAND 5 820 8
COLOUR_TEXT_REGION 5 820 8 820 51
STRAND 33 820 36
COLOUR_TEXT_REGION 33 820 36 820 51
STRAND 51 820 56
COLOUR_TEXT_REGION 51 820 56 820 51
STRAND 77 820 81
COLOUR_TEXT_REGION 77 820 81 820 51
STRAND 108 820 109
COLOUR_TEXT_REGION 108 820 109 820 51
HELIX 15 820 30
COLOUR_TEXT_REGION 15 820 30 820 50
HELIX 39 820 47
COLOUR_TEXT_REGION 39 820 47 820 50
HELIX 63 820 72
COLOUR_TEXT_REGION 63 820 72 820 50
HELIX 94 820 103
COLOUR_TEXT_REGION 94 820 103 820 50
HELIX 112 820 126
COLOUR_TEXT_REGION 112 820 126 820 50