SILENT_MODE BLOCK_FILE jp_JSSbGrv.concise.blc MAX_NSEQ 955 MAX_INPUT_LEN 957 OUTPUT_FILE jp_JSSbGrv.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 138 944 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 945 138 954 H SPACE SUB_CHARS 1 945 138 954 E SPACE SUB_CHARS 1 945 138 954 - SPACE STRAND 3 948 6 COLOUR_TEXT_REGION 3 948 6 948 51 STRAND 41 948 46 COLOUR_TEXT_REGION 41 948 46 948 51 STRAND 66 948 70 COLOUR_TEXT_REGION 66 948 70 948 51 STRAND 92 948 97 COLOUR_TEXT_REGION 92 948 97 948 51 STRAND 116 948 122 COLOUR_TEXT_REGION 116 948 122 948 51 HELIX 24 948 37 COLOUR_TEXT_REGION 24 948 37 948 50 HELIX 50 948 61 COLOUR_TEXT_REGION 50 948 61 948 50 HELIX 78 948 86 COLOUR_TEXT_REGION 78 948 86 948 50 HELIX 127 948 136 COLOUR_TEXT_REGION 127 948 136 948 50 STRAND 2 953 6 COLOUR_TEXT_REGION 2 953 6 953 51 STRAND 40 953 47 COLOUR_TEXT_REGION 40 953 47 953 51 STRAND 65 953 69 COLOUR_TEXT_REGION 65 953 69 953 51 STRAND 92 953 97 COLOUR_TEXT_REGION 92 953 97 953 51 STRAND 116 953 122 COLOUR_TEXT_REGION 116 953 122 953 51 HELIX 24 953 37 COLOUR_TEXT_REGION 24 953 37 953 50 HELIX 50 953 61 COLOUR_TEXT_REGION 50 953 61 953 50 HELIX 74 953 75 COLOUR_TEXT_REGION 74 953 75 953 50 HELIX 78 953 86 COLOUR_TEXT_REGION 78 953 86 953 50 HELIX 115 953 115 COLOUR_TEXT_REGION 115 953 115 953 50 HELIX 127 953 136 COLOUR_TEXT_REGION 127 953 136 953 50 STRAND 3 954 6 COLOUR_TEXT_REGION 3 954 6 954 51 STRAND 41 954 45 COLOUR_TEXT_REGION 41 954 45 954 51 STRAND 66 954 70 COLOUR_TEXT_REGION 66 954 70 954 51 STRAND 91 954 97 COLOUR_TEXT_REGION 91 954 97 954 51 STRAND 117 954 122 COLOUR_TEXT_REGION 117 954 122 954 51 HELIX 23 954 37 COLOUR_TEXT_REGION 23 954 37 954 50 HELIX 49 954 61 COLOUR_TEXT_REGION 49 954 61 954 50 HELIX 80 954 86 COLOUR_TEXT_REGION 80 954 86 954 50 HELIX 127 954 136 COLOUR_TEXT_REGION 127 954 136 954 50