SILENT_MODE BLOCK_FILE jp_YpXGVWl.concise.blc MAX_NSEQ 556 MAX_INPUT_LEN 558 OUTPUT_FILE jp_YpXGVWl.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 201 545 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 546 201 555 H SPACE SUB_CHARS 1 546 201 555 E SPACE SUB_CHARS 1 546 201 555 - SPACE STRAND 6 549 12 COLOUR_TEXT_REGION 6 549 12 549 51 STRAND 48 549 52 COLOUR_TEXT_REGION 48 549 52 549 51 STRAND 57 549 62 COLOUR_TEXT_REGION 57 549 62 549 51 STRAND 77 549 80 COLOUR_TEXT_REGION 77 549 80 549 51 STRAND 93 549 100 COLOUR_TEXT_REGION 93 549 100 549 51 STRAND 103 549 106 COLOUR_TEXT_REGION 103 549 106 549 51 STRAND 112 549 116 COLOUR_TEXT_REGION 112 549 116 549 51 STRAND 135 549 136 COLOUR_TEXT_REGION 135 549 136 549 51 STRAND 145 549 148 COLOUR_TEXT_REGION 145 549 148 549 51 STRAND 158 549 173 COLOUR_TEXT_REGION 158 549 173 549 51 STRAND 198 549 198 COLOUR_TEXT_REGION 198 549 198 549 51 HELIX 17 549 23 COLOUR_TEXT_REGION 17 549 23 549 50 HELIX 26 549 36 COLOUR_TEXT_REGION 26 549 36 549 50 HELIX 118 549 131 COLOUR_TEXT_REGION 118 549 131 549 50 HELIX 175 549 184 COLOUR_TEXT_REGION 175 549 184 549 50 STRAND 6 554 12 COLOUR_TEXT_REGION 6 554 12 554 51 STRAND 48 554 52 COLOUR_TEXT_REGION 48 554 52 554 51 STRAND 57 554 62 COLOUR_TEXT_REGION 57 554 62 554 51 STRAND 77 554 80 COLOUR_TEXT_REGION 77 554 80 554 51 STRAND 93 554 100 COLOUR_TEXT_REGION 93 554 100 554 51 STRAND 103 554 106 COLOUR_TEXT_REGION 103 554 106 554 51 STRAND 112 554 116 COLOUR_TEXT_REGION 112 554 116 554 51 STRAND 135 554 136 COLOUR_TEXT_REGION 135 554 136 554 51 STRAND 145 554 148 COLOUR_TEXT_REGION 145 554 148 554 51 STRAND 158 554 173 COLOUR_TEXT_REGION 158 554 173 554 51 STRAND 198 554 199 COLOUR_TEXT_REGION 198 554 199 554 51 HELIX 17 554 23 COLOUR_TEXT_REGION 17 554 23 554 50 HELIX 26 554 36 COLOUR_TEXT_REGION 26 554 36 554 50 HELIX 118 554 130 COLOUR_TEXT_REGION 118 554 130 554 50 HELIX 175 554 184 COLOUR_TEXT_REGION 175 554 184 554 50 STRAND 5 555 12 COLOUR_TEXT_REGION 5 555 12 555 51 STRAND 48 555 52 COLOUR_TEXT_REGION 48 555 52 555 51 STRAND 57 555 62 COLOUR_TEXT_REGION 57 555 62 555 51 STRAND 77 555 80 COLOUR_TEXT_REGION 77 555 80 555 51 STRAND 93 555 101 COLOUR_TEXT_REGION 93 555 101 555 51 STRAND 103 555 106 COLOUR_TEXT_REGION 103 555 106 555 51 STRAND 112 555 115 COLOUR_TEXT_REGION 112 555 115 555 51 STRAND 135 555 137 COLOUR_TEXT_REGION 135 555 137 555 51 STRAND 144 555 146 COLOUR_TEXT_REGION 144 555 146 555 51 STRAND 148 555 148 COLOUR_TEXT_REGION 148 555 148 555 51 STRAND 158 555 173 COLOUR_TEXT_REGION 158 555 173 555 51 HELIX 17 555 24 COLOUR_TEXT_REGION 17 555 24 555 50 HELIX 26 555 36 COLOUR_TEXT_REGION 26 555 36 555 50 HELIX 118 555 131 COLOUR_TEXT_REGION 118 555 131 555 50 HELIX 175 555 184 COLOUR_TEXT_REGION 175 555 184 555 50