SILENT_MODE
BLOCK_FILE jp_C7CczSo.concise.blc
MAX_NSEQ 611
MAX_INPUT_LEN 613
OUTPUT_FILE jp_C7CczSo.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 126 600   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 601 126 610 H SPACE
SUB_CHARS 1 601 126 610 E SPACE
SUB_CHARS 1 601 126 610 - SPACE
HELIX 5 604 30
COLOUR_TEXT_REGION 5 604 30 604 50
HELIX 38 604 54
COLOUR_TEXT_REGION 38 604 54 604 50
HELIX 70 604 73
COLOUR_TEXT_REGION 70 604 73 604 50
HELIX 76 604 97
COLOUR_TEXT_REGION 76 604 97 604 50
HELIX 102 604 124
COLOUR_TEXT_REGION 102 604 124 604 50
HELIX 5 609 30
COLOUR_TEXT_REGION 5 609 30 609 50
HELIX 38 609 54
COLOUR_TEXT_REGION 38 609 54 609 50
HELIX 70 609 72
COLOUR_TEXT_REGION 70 609 72 609 50
HELIX 76 609 97
COLOUR_TEXT_REGION 76 609 97 609 50
HELIX 102 609 124
COLOUR_TEXT_REGION 102 609 124 609 50
HELIX 5 610 30
COLOUR_TEXT_REGION 5 610 30 610 50
HELIX 37 610 53
COLOUR_TEXT_REGION 37 610 53 610 50
HELIX 70 610 73
COLOUR_TEXT_REGION 70 610 73 610 50
HELIX 76 610 97
COLOUR_TEXT_REGION 76 610 97 610 50
HELIX 102 610 124
COLOUR_TEXT_REGION 102 610 124 610 50