SILENT_MODE BLOCK_FILE jp_y0vAsyT.concise.blc MAX_NSEQ 357 MAX_INPUT_LEN 359 OUTPUT_FILE jp_y0vAsyT.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 65 346 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 347 65 356 H SPACE SUB_CHARS 1 347 65 356 E SPACE SUB_CHARS 1 347 65 356 - SPACE STRAND 16 350 22 COLOUR_TEXT_REGION 16 350 22 350 51 STRAND 25 350 33 COLOUR_TEXT_REGION 25 350 33 350 51 STRAND 37 350 42 COLOUR_TEXT_REGION 37 350 42 350 51 STRAND 46 350 51 COLOUR_TEXT_REGION 46 350 51 350 51 STRAND 56 350 59 COLOUR_TEXT_REGION 56 350 59 350 51 HELIX 3 350 12 COLOUR_TEXT_REGION 3 350 12 350 50 STRAND 16 355 22 COLOUR_TEXT_REGION 16 355 22 355 51 STRAND 25 355 33 COLOUR_TEXT_REGION 25 355 33 355 51 STRAND 37 355 42 COLOUR_TEXT_REGION 37 355 42 355 51 STRAND 46 355 50 COLOUR_TEXT_REGION 46 355 50 355 51 STRAND 56 355 59 COLOUR_TEXT_REGION 56 355 59 355 51 HELIX 3 355 12 COLOUR_TEXT_REGION 3 355 12 355 50 STRAND 17 356 22 COLOUR_TEXT_REGION 17 356 22 356 51 STRAND 26 356 33 COLOUR_TEXT_REGION 26 356 33 356 51 STRAND 37 356 42 COLOUR_TEXT_REGION 37 356 42 356 51 STRAND 47 356 52 COLOUR_TEXT_REGION 47 356 52 356 51 STRAND 55 356 58 COLOUR_TEXT_REGION 55 356 58 356 51 HELIX 3 356 12 COLOUR_TEXT_REGION 3 356 12 356 50 HELIX 53 356 54 COLOUR_TEXT_REGION 53 356 54 356 50