QUERY           : MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEGG : QUERY 
UniRef90_D7S024 : MDYNTVSSFQVDCFIWHIRKRFADNGLGDAPFLDRLRRDQKSLKGRGSTIGLDIETVTLVGKQIVEWILKEESN : UniRef90_D7S024
UniRef90_J9ULD2 : MDSNTVSSFQVDCFLWHVRKRFADWGLGDAPFLDRLRRDQKSLKGRGYTLGLDIXSATCAGKQIVKHILEGE-- : UniRef90_J9ULD2
UniRef90_F2VSD1 : MDSFTVTSFQVACFLWHISQRFADQDMGDAPFLDRLGRDQKSLRGRGNTLGLDIETATRAGKQIVERILGEESD : UniRef90_F2VSD1
UniRef90_B7SB84 : --------FQVDCFLWHVRKRFADQELGDAPFLDRLRRDQKSLRGRGSTLGLDIETATRAGRQIMEKILEEESD : UniRef90_B7SB84
UniRef90_F6GKV2 : --------FQVDCFLWHIRKRFANNGLGDAPFLDRLRRDQKSLKGRGNTLGLDIETATLVGKQIVEWILKEESS : UniRef90_F6GKV2
UniRef90_A0PAA4 : MDSNTITSFQVDCYLWHIRKLLSMRDMCDAPFDDRLRRDQKALKRRGNTLGLDIRVATIEGKKIVEDILKGE-- : UniRef90_A0PAA4
UniRef90_Q83969 : MDSNTVSSFQVDCFLWHVRKQIADQELGDAPFLDRLRRDQKSLRGRGSTLGLDIEAATHVGKQIV--------- : UniRef90_Q83969
UniRef90_C9S2B2 : ------------CFLWHIRKQVVDQELSDAPFLDRLRRDQRSLRGRGNTLGLDIKAATHVGKQIVEKILKEESD : UniRef90_C9S2B2
UniRef90_H6QM79 : MEPNTTIAFQVDCYLWHLKKTLSMMGEVDAPFEDRLRREQKALKGRSMTLGIDIQSATQEGYYKIKSITEE--- : UniRef90_H6QM79
UniRef90_Q84139 : MDPNTVSSFQVDCFLWHVRKRVADQELGDAPFLXXLRRDQKFLRGRGSTLGLDI-------------------- : UniRef90_Q84139
UniRef90_E3JLN5 : ----------------------------DAPFLDRLRRDQKSLKGRGNTLGLAIETATLVGKQIVEWILKEESS : UniRef90_E3JLN5
UniRef90_Q8B1T7 : -------------------------DMCDAPFDDRLRRDQKALKGRGSTLGLDLRVATMEGKKIVEDILKGETD : UniRef90_Q8B1T7
UniRef90_Q2XVA4 : -------------------------------------RDQRSLRGRGNTLGLDIKAATHVGKQIVEKILKEESD : UniRef90_Q2XVA4

                : 1---------11--------21--------31--------41--------51--------61--------71-- :
OrigSeq         : MDPNTVSSFQVDCFLWHVRKRLADQELGDAPFLDRLRRDQKSLRGRGNTLGLDIETATRAGKQIVERILEEEGG : OrigSeq

Jnet            : -----EEEEEHHHHHHHHHHHHH--------HHHHHHHHHHHHH-----E-EEHHHHHHHHHHHHHHHHH---- : Jnet
jhmm            : -----EEEEEE-HHHHHHHHHHH-----------HHHHHHHHH-----EEEEEEHHHHHHHHHHHHHHHH---- : jhmm
jpssm           : -------EEEHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH--- : jpssm

Lupas 14        : -------------------------------------------------------------------------- : Lupas 14
Lupas 21        : -------------------------------------------------------------------------- : Lupas 21
Lupas 28        : -------------------------------------------------------------------------- : Lupas 28

Jnet_25         : ----BB-BBBBBBBBBBB---B-----B-B-B---B------B---B-BBBB-B-BBB--B--BB--BB----- : Jnet_25
Jnet_5          : --------B-B-BBBB-B-------------------------------B---B------B---B--B------ : Jnet_5
Jnet_0          : ------------B---------------------------------------------------B--------- : Jnet_0
Jnet Rel        : 99987021200288999999986047887630129987688882358812122157758999999999863799 : Jnet Rel

Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.