Jpred secondary structure prediction results

QUERY           : SSGMSLLTEVETYVLSIIPSGPLKAEIAQKLEDVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSRRRFVQNALNDPNNMDRAVKLYKKLKREITFHGAKEVALSYSTGALASCMGLIYNRMGTVTTEVAFGLVCATCEQIADSQ : QUERY 
UniRef90_H6QM77 : ---MSILTEVETYVLSIIPSGPLKADIAQKLEDVFSGRNSDLDTLLEWLKARPILSPLTKGIVGFVFTLTVPCRRKFIQTALNGNGNMDKAVKIYKKLKKEITFHGAKEVALSYPTGALACCMGLIYNRMGSVTTEVAFGLVCATCEHIADSQ : UniRef90_H6QM77
UniRef90_R4P9M3 : ---MSLLTEVETYVLSIVPSGPLKAEIAQRLEDVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSRRRFVQNALNDPNNMDRAVKLYKKLKREITFHGAKEVALSYSTGALASCMGLIYNRMGTVTT------------------ : UniRef90_R4P9M3
UniRef90_D1CL12 : -----------TYVXSIXXXXPLKAEIAQRLESVFAGKNTDLEALMEWLXTRPXLXPLXKGILGFVFTLTVXSERRFVQXALXDPNNMDRAVKLYKKLKREITFXGAXEVSLSYSTGALASCMGLIYNRMGTVTTEAAFGLVCATCEQIADSQ : UniRef90_D1CL12
UniRef90_Q91U60 : ---MSLLTEVETYVLSIIPSGPLKAEIAQRLEDVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSERRFVQNALNDPNNMDRAVKLYQKLKREMTFHGAKEVALSYSTGALA--------------------------------- : UniRef90_Q91U60
UniRef90_Q82600 : --------------------------------------NTDLEVLMEWLKTRPILSPLTKGILGFVFTLTVPSRRRFVQNALNDPNNMDKAVKLYRKLKREITFHGAKEISLSYSAGALASCMGLIYNRMGAVTTEVAFGLVCATCEQIADSQ : UniRef90_Q82600
UniRef90_P03489 : ---MSLFGDTIAYLLSLIEDGEGKAELAEKLHCWFGGKEFDLDSALEWIKNKRCLTDIQKALIGASICFLKPKKRRFITEPLSGMGTTATKKKAERKMRRCVSFHEAFEIAEGHESSALLYCLMVMYLNPENYSMQVKLGTLCALCEKQA--- : UniRef90_P03489
UniRef90_Q068H1 : -------------------------------EDVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSRRRFVXXXXXXXXXXXXXXXXXXXXXREITFHGAKEVALSYSTGALASCMGLIYNRMGTVTTEVAFGLVCATCEQIADSQ : UniRef90_Q068H1
UniRef90_Q3LZ72 : -------------------------------------------------------------------------RRRFVQNALNDPNNMDRAVKLYKKLKREVTFHGAKEVALSYSTGALASCMGLIYNRMGTVTTEGAFGLVCATCEQIADSQ : UniRef90_Q3LZ72
UniRef90_G9K136 : ---------------------------------------------------RPILSPLTKGILGFVFTLTVPSRRRFVQNALNDPNNMDKAVKLYRKLKREITFHGAKEIALSYSAGALASCMGLIYNRM----------------------- : UniRef90_G9K136
UniRef90_D3UBI5 : -----LLTEVETYVLSIIPSGPLKAEIAQRMEGVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSRRRFVQNAL----------------------------------------------------------------------- : UniRef90_D3UBI5

                : 1---------11--------21--------31--------41--------51--------61--------71--------81--------91--------101-------111-------121-------131-------141-------151 :
OrigSeq         : SSGMSLLTEVETYVLSIIPSGPLKAEIAQKLEDVFAGKNTDLEALMEWLKTRPILSPLTKGILGFVFTLTVPSRRRFVQNALNDPNNMDRAVKLYKKLKREITFHGAKEVALSYSTGALASCMGLIYNRMGTVTTEVAFGLVCATCEQIADSQ : OrigSeq

Jnet            : ----HHHHHHHHHHHHHH------HHHHHHHHHHH------HHHHHHHHHH-----HHHHHHHHHHEEE------HHHHHH------HHHHHHHHHHHH--EE----HHHH-----HHHHHHHHHHH------HHHHHHHHHHHHHHHHH--- : Jnet
jhmm            : ----EEH-HHHHHHHHHH------HHHHHHHHHHH------HHHHHHHHHH-----HHHHHHHHHEEEEE-----HHHHHH------HHHHHHHHHHHH-EEEE---HHHH----HHHHHHHHHHHH------HHHHHHHHHHHHHHHHH--- : jhmm
jpssm           : ----HHHHHHHHHHHHH-------HHHHHHHHHHH------HHHHHHHHHH-----HHHHHHHHHHHHH-----HHHHHH-------HHHHHHHHHHHH-------HHHHH--------HHHHHHHH-----HHHHHHHHHHHHHHHHHH--- : jpssm

Lupas 14        : ---------------------------------------------------------------------------------------cccccccccccccc---------------------------------------------------- : Lupas 14
Lupas 21        : --------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 21
Lupas 28        : --------------------------------------------------------------------------------------------------------------------------------------------------------- : Lupas 28

Jnet_25         : --BB-BBB-BBBBBBBBB--------BB--B--BBBB----B-BBB-BB----BB--B--BBBBBBBBBBB-----BB---B-----B--B--B---B---B-B--B--BB-BB--BBBBBBBBBBBB----B-B-BBBBBBBBBB------- : Jnet_25
Jnet_5          : -------------BB-B---------B---B----------B--BB--B-----B--B----BBB-B----------B-----------------------B----B--B--------BB-BBBBB------------B--BBB-B------- : Jnet_5
Jnet_0          : -------------B-----------------------------------------------------------------------------------------------------------B--B----------------BB--B------- : Jnet_0
Jnet Rel        : 998024948876653100788764267778887631688747899999885378861789998872023288740465522478774279999999874120115424443367811244888887438986257787627899999861799 : Jnet Rel


Notes
Key:
Colour code for alignment:
Blue            - Complete identity at a position
Shades of red   - The more red a position is, the higher the level of
                  conservation of chemical properties of the amino acids
Jnet            - Final secondary structure prediction for query
jalign          - Jnet alignment prediction
jhmm            - Jnet hmm profile prediction
jpssm           - Jnet PSIBLAST pssm profile prediction

Lupas           - Lupas Coil prediction (window size of 14, 21 and 28)

Note on coiled coil predictions  - = less than 50% probability
                                 c = between 50% and 90% probability
                                 C = greater than 90% probability

Jnet_25         - Jnet prediction of burial, less than 25% solvent accesibility
Jnet_5          - Jnet prediction of burial, less than 5% exposure
Jnet_0          - Jnet prediction of burial, 0% exposure
Jnet Rel        - Jnet reliability of prediction accuracy, ranges from 0 to 9, bigger is better.