SILENT_MODE BLOCK_FILE jp_41TWkPI.concise.blc MAX_NSEQ 810 MAX_INPUT_LEN 812 OUTPUT_FILE jp_41TWkPI.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 89 799 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 800 89 809 H SPACE SUB_CHARS 1 800 89 809 E SPACE SUB_CHARS 1 800 89 809 - SPACE STRAND 3 803 7 COLOUR_TEXT_REGION 3 803 7 803 51 STRAND 50 803 55 COLOUR_TEXT_REGION 50 803 55 803 51 STRAND 84 803 88 COLOUR_TEXT_REGION 84 803 88 803 51 HELIX 14 803 25 COLOUR_TEXT_REGION 14 803 25 803 50 HELIX 35 803 43 COLOUR_TEXT_REGION 35 803 43 803 50 HELIX 58 803 62 COLOUR_TEXT_REGION 58 803 62 803 50 HELIX 64 803 80 COLOUR_TEXT_REGION 64 803 80 803 50 STRAND 3 808 7 COLOUR_TEXT_REGION 3 808 7 808 51 STRAND 50 808 55 COLOUR_TEXT_REGION 50 808 55 808 51 STRAND 84 808 87 COLOUR_TEXT_REGION 84 808 87 808 51 HELIX 14 808 24 COLOUR_TEXT_REGION 14 808 24 808 50 HELIX 35 808 42 COLOUR_TEXT_REGION 35 808 42 808 50 HELIX 58 808 80 COLOUR_TEXT_REGION 58 808 80 808 50 STRAND 3 809 7 COLOUR_TEXT_REGION 3 809 7 809 51 STRAND 50 809 55 COLOUR_TEXT_REGION 50 809 55 809 51 STRAND 84 809 88 COLOUR_TEXT_REGION 84 809 88 809 51 HELIX 14 809 25 COLOUR_TEXT_REGION 14 809 25 809 50 HELIX 35 809 43 COLOUR_TEXT_REGION 35 809 43 809 50 HELIX 58 809 61 COLOUR_TEXT_REGION 58 809 61 809 50 HELIX 65 809 80 COLOUR_TEXT_REGION 65 809 80 809 50