SILENT_MODE
BLOCK_FILE jp_dF2hcmF.concise.blc
MAX_NSEQ 796
MAX_INPUT_LEN 798
OUTPUT_FILE jp_dF2hcmF.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 85 785   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 786 85 795 H SPACE
SUB_CHARS 1 786 85 795 E SPACE
SUB_CHARS 1 786 85 795 - SPACE
STRAND 3 789 11
COLOUR_TEXT_REGION 3 789 11 789 51
STRAND 38 789 48
COLOUR_TEXT_REGION 38 789 48 789 51
STRAND 74 789 83
COLOUR_TEXT_REGION 74 789 83 789 51
HELIX 18 789 29
COLOUR_TEXT_REGION 18 789 29 789 50
HELIX 53 789 68
COLOUR_TEXT_REGION 53 789 68 789 50
STRAND 3 794 11
COLOUR_TEXT_REGION 3 794 11 794 51
STRAND 38 794 48
COLOUR_TEXT_REGION 38 794 48 794 51
STRAND 75 794 83
COLOUR_TEXT_REGION 75 794 83 794 51
HELIX 18 794 29
COLOUR_TEXT_REGION 18 794 29 794 50
HELIX 53 794 67
COLOUR_TEXT_REGION 53 794 67 794 50
STRAND 3 795 11
COLOUR_TEXT_REGION 3 795 11 795 51
STRAND 39 795 48
COLOUR_TEXT_REGION 39 795 48 795 51
STRAND 74 795 83
COLOUR_TEXT_REGION 74 795 83 795 51
HELIX 18 795 29
COLOUR_TEXT_REGION 18 795 29 795 50
HELIX 53 795 68
COLOUR_TEXT_REGION 53 795 68 795 50