Filename Description -------- ----------- jp__U3tZou.align PSIBLAST alignment with gaps and redundancy removed in FASTA format jp__U3tZou.als Alscript command file. Used to generate PS/PDF outputjp__U3tZou.blast.gz PSIBLAST output (compressed) jp__U3tZou.coils.csv The output from coils in CSV format jp__U3tZou.coilseq.lupas_14 The output from coils using a window length of 14 jp__U3tZou.coilseq.lupas_21 The output from coils using a window length of 21 jp__U3tZou.coilseq.lupas_28 The output from coils using a window length of 28 jp__U3tZou.concise The prediction in pseudo-CSV format, including the coiled-coil prediction, solvent accessiblity and the sequence alignment jp__U3tZou.concise.blc A BLC file of the prediction and alignment jp__U3tZou.concise.pdf A PDF file of the prediction and alignment jp__U3tZou.fasta Input query sequence in FASTA format jp__U3tZou.full_MSA.fasta The full multuple sequence alignment before JPred filters. Gaps/insertions shown. FASTA format. jp__U3tZou.hmm The HHMer2 profile of the alignment jp__U3tZou.html A HTML file of the prediction and alignment jp__U3tZou.input Your raw input jp__U3tZou.jalview A Jalview annotation file to be read in with the .align file to view the predictions in Jalview jp__U3tZou.jnet The output from Jnet jp__U3tZou.profile PSIBLAST profile jp__U3tZou.pssm PSIBLAST PSSM in a format for Jnet jp__U3tZou.seq Your sequence jp__U3tZou.simple.html The brief HTML output of the query sequence and prediction only jp__U3tZou.svg.html A Jalview generated SVG file with summary of the results.