SILENT_MODE
BLOCK_FILE jp_TNWKoF3.concise.blc
MAX_NSEQ 805
MAX_INPUT_LEN 807
OUTPUT_FILE jp_TNWKoF3.concise.ps
PORTRAIT
POINTSIZE 8
IDENT_WIDTH 12
X_OFFSET 2
Y_OFFSET 2
DEFINE_FONT 0 Helvetica		DEFAULT 
DEFINE_FONT 1 Helvetica		REL		0.75   
DEFINE_FONT 7 Helvetica		REL		0.6
DEFINE_FONT 3 Helvetica-Bold	DEFAULT    
DEFINE_FONT 4 Times-Bold    	DEFAULT   
DEFINE_FONT 5 Helvetica-BoldOblique	DEFAULT 
#
DEFINE_COLOUR 3  1 0.62 0.67	# Turquiose
DEFINE_COLOUR 4  1 1 0		# Yellow
DEFINE_COLOUR 5  1 0 0		# Red
DEFINE_COLOUR 7  1 0 1		# Purple
DEFINE_COLOUR 8  0 0 1		# Blue
DEFINE_COLOUR 9  0 1 0		# Green
DEFINE_COLOUR 10 0.41 0.64 1.00	# Pale blue 
DEFINE_COLOUR 11 0.41 0.82 0.67	# Pale green 
DEFINE_COLOUR 50 0.69 0.18 0.37	# Pink (helix)
DEFINE_COLOUR 51 1.00 0.89 0.00	# Gold (strand)
NUMBER_INT 10
SETUP
#
# Highlight specific residues.
# Avoid highlighting Lupas 'C' predictions by
# limiting the highlighting to the alignments 
Scol_CHARS	C 1 1 79 794   4
Ccol_CHARS	H ALL    5
Ccol_CHARS	P ALL    8
SURROUND_CHARS LIV   ALL
#
# Replace known structure types with whitespace
SUB_CHARS 1 795 79 804 H SPACE
SUB_CHARS 1 795 79 804 E SPACE
SUB_CHARS 1 795 79 804 - SPACE
STRAND 7 798 14
COLOUR_TEXT_REGION 7 798 14 798 51
STRAND 19 798 25
COLOUR_TEXT_REGION 19 798 25 798 51
STRAND 48 798 53
COLOUR_TEXT_REGION 48 798 53 798 51
STRAND 74 798 77
COLOUR_TEXT_REGION 74 798 77 798 51
HELIX 30 798 41
COLOUR_TEXT_REGION 30 798 41 798 50
STRAND 7 803 14
COLOUR_TEXT_REGION 7 803 14 803 51
STRAND 19 803 25
COLOUR_TEXT_REGION 19 803 25 803 51
STRAND 48 803 53
COLOUR_TEXT_REGION 48 803 53 803 51
STRAND 74 803 78
COLOUR_TEXT_REGION 74 803 78 803 51
HELIX 30 803 41
COLOUR_TEXT_REGION 30 803 41 803 50
HELIX 64 803 65
COLOUR_TEXT_REGION 64 803 65 803 50
STRAND 7 804 14
COLOUR_TEXT_REGION 7 804 14 804 51
STRAND 19 804 25
COLOUR_TEXT_REGION 19 804 25 804 51
STRAND 48 804 53
COLOUR_TEXT_REGION 48 804 53 804 51
STRAND 74 804 77
COLOUR_TEXT_REGION 74 804 77 804 51
HELIX 30 804 41
COLOUR_TEXT_REGION 30 804 41 804 50