SILENT_MODE BLOCK_FILE jp_D_298Ls.concise.blc MAX_NSEQ 580 MAX_INPUT_LEN 582 OUTPUT_FILE jp_D_298Ls.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 359 569 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 570 359 579 H SPACE SUB_CHARS 1 570 359 579 E SPACE SUB_CHARS 1 570 359 579 - SPACE STRAND 12 573 18 COLOUR_TEXT_REGION 12 573 18 573 51 STRAND 58 573 61 COLOUR_TEXT_REGION 58 573 61 573 51 STRAND 86 573 91 COLOUR_TEXT_REGION 86 573 91 573 51 STRAND 109 573 113 COLOUR_TEXT_REGION 109 573 113 573 51 STRAND 139 573 143 COLOUR_TEXT_REGION 139 573 143 573 51 STRAND 180 573 184 COLOUR_TEXT_REGION 180 573 184 573 51 STRAND 210 573 212 COLOUR_TEXT_REGION 210 573 212 573 51 STRAND 299 573 303 COLOUR_TEXT_REGION 299 573 303 573 51 STRAND 336 573 339 COLOUR_TEXT_REGION 336 573 339 573 51 HELIX 6 573 6 COLOUR_TEXT_REGION 6 573 6 573 50 HELIX 27 573 50 COLOUR_TEXT_REGION 27 573 50 573 50 HELIX 69 573 81 COLOUR_TEXT_REGION 69 573 81 573 50 HELIX 99 573 102 COLOUR_TEXT_REGION 99 573 102 573 50 HELIX 121 573 134 COLOUR_TEXT_REGION 121 573 134 573 50 HELIX 156 573 177 COLOUR_TEXT_REGION 156 573 177 573 50 HELIX 198 573 204 COLOUR_TEXT_REGION 198 573 204 573 50 HELIX 214 573 222 COLOUR_TEXT_REGION 214 573 222 573 50 HELIX 228 573 240 COLOUR_TEXT_REGION 228 573 240 573 50 HELIX 257 573 280 COLOUR_TEXT_REGION 257 573 280 573 50 HELIX 283 573 294 COLOUR_TEXT_REGION 283 573 294 573 50 HELIX 318 573 322 COLOUR_TEXT_REGION 318 573 322 573 50 HELIX 343 573 356 COLOUR_TEXT_REGION 343 573 356 573 50 STRAND 12 578 18 COLOUR_TEXT_REGION 12 578 18 578 51 STRAND 58 578 61 COLOUR_TEXT_REGION 58 578 61 578 51 STRAND 86 578 92 COLOUR_TEXT_REGION 86 578 92 578 51 STRAND 109 578 113 COLOUR_TEXT_REGION 109 578 113 578 51 STRAND 139 578 143 COLOUR_TEXT_REGION 139 578 143 578 51 STRAND 180 578 184 COLOUR_TEXT_REGION 180 578 184 578 51 STRAND 208 578 212 COLOUR_TEXT_REGION 208 578 212 578 51 STRAND 299 578 304 COLOUR_TEXT_REGION 299 578 304 578 51 STRAND 336 578 339 COLOUR_TEXT_REGION 336 578 339 578 51 HELIX 4 578 7 COLOUR_TEXT_REGION 4 578 7 578 50 HELIX 30 578 51 COLOUR_TEXT_REGION 30 578 51 578 50 HELIX 69 578 81 COLOUR_TEXT_REGION 69 578 81 578 50 HELIX 99 578 103 COLOUR_TEXT_REGION 99 578 103 578 50 HELIX 122 578 134 COLOUR_TEXT_REGION 122 578 134 578 50 HELIX 156 578 177 COLOUR_TEXT_REGION 156 578 177 578 50 HELIX 198 578 204 COLOUR_TEXT_REGION 198 578 204 578 50 HELIX 214 578 223 COLOUR_TEXT_REGION 214 578 223 578 50 HELIX 228 578 240 COLOUR_TEXT_REGION 228 578 240 578 50 HELIX 257 578 280 COLOUR_TEXT_REGION 257 578 280 578 50 HELIX 283 578 294 COLOUR_TEXT_REGION 283 578 294 578 50 HELIX 319 578 320 COLOUR_TEXT_REGION 319 578 320 578 50 HELIX 344 578 357 COLOUR_TEXT_REGION 344 578 357 578 50 STRAND 12 579 17 COLOUR_TEXT_REGION 12 579 17 579 51 STRAND 57 579 61 COLOUR_TEXT_REGION 57 579 61 579 51 STRAND 86 579 91 COLOUR_TEXT_REGION 86 579 91 579 51 STRAND 99 579 102 COLOUR_TEXT_REGION 99 579 102 579 51 STRAND 109 579 112 COLOUR_TEXT_REGION 109 579 112 579 51 STRAND 139 579 143 COLOUR_TEXT_REGION 139 579 143 579 51 STRAND 180 579 183 COLOUR_TEXT_REGION 180 579 183 579 51 STRAND 244 579 245 COLOUR_TEXT_REGION 244 579 245 579 51 STRAND 299 579 302 COLOUR_TEXT_REGION 299 579 302 579 51 STRAND 336 579 340 COLOUR_TEXT_REGION 336 579 340 579 51 HELIX 25 579 48 COLOUR_TEXT_REGION 25 579 48 579 50 HELIX 69 579 81 COLOUR_TEXT_REGION 69 579 81 579 50 HELIX 120 579 134 COLOUR_TEXT_REGION 120 579 134 579 50 HELIX 156 579 176 COLOUR_TEXT_REGION 156 579 176 579 50 HELIX 198 579 203 COLOUR_TEXT_REGION 198 579 203 579 50 HELIX 214 579 222 COLOUR_TEXT_REGION 214 579 222 579 50 HELIX 228 579 240 COLOUR_TEXT_REGION 228 579 240 579 50 HELIX 257 579 278 COLOUR_TEXT_REGION 257 579 278 579 50 HELIX 283 579 286 COLOUR_TEXT_REGION 283 579 286 579 50 HELIX 290 579 294 COLOUR_TEXT_REGION 290 579 294 579 50 HELIX 316 579 322 COLOUR_TEXT_REGION 316 579 322 579 50 HELIX 341 579 356 COLOUR_TEXT_REGION 341 579 356 579 50