SILENT_MODE BLOCK_FILE jp_hRMpIf2.concise.blc MAX_NSEQ 165 MAX_INPUT_LEN 167 OUTPUT_FILE jp_hRMpIf2.concise.ps PORTRAIT POINTSIZE 8 IDENT_WIDTH 12 X_OFFSET 2 Y_OFFSET 2 DEFINE_FONT 0 Helvetica DEFAULT DEFINE_FONT 1 Helvetica REL 0.75 DEFINE_FONT 7 Helvetica REL 0.6 DEFINE_FONT 3 Helvetica-Bold DEFAULT DEFINE_FONT 4 Times-Bold DEFAULT DEFINE_FONT 5 Helvetica-BoldOblique DEFAULT # DEFINE_COLOUR 3 1 0.62 0.67 # Turquiose DEFINE_COLOUR 4 1 1 0 # Yellow DEFINE_COLOUR 5 1 0 0 # Red DEFINE_COLOUR 7 1 0 1 # Purple DEFINE_COLOUR 8 0 0 1 # Blue DEFINE_COLOUR 9 0 1 0 # Green DEFINE_COLOUR 10 0.41 0.64 1.00 # Pale blue DEFINE_COLOUR 11 0.41 0.82 0.67 # Pale green DEFINE_COLOUR 50 0.69 0.18 0.37 # Pink (helix) DEFINE_COLOUR 51 1.00 0.89 0.00 # Gold (strand) NUMBER_INT 10 SETUP # # Highlight specific residues. # Avoid highlighting Lupas 'C' predictions by # limiting the highlighting to the alignments Scol_CHARS C 1 1 230 154 4 Ccol_CHARS H ALL 5 Ccol_CHARS P ALL 8 SURROUND_CHARS LIV ALL # # Replace known structure types with whitespace SUB_CHARS 1 155 230 164 H SPACE SUB_CHARS 1 155 230 164 E SPACE SUB_CHARS 1 155 230 164 - SPACE STRAND 32 158 36 COLOUR_TEXT_REGION 32 158 36 158 51 STRAND 57 158 57 COLOUR_TEXT_REGION 57 158 57 158 51 STRAND 91 158 95 COLOUR_TEXT_REGION 91 158 95 158 51 STRAND 101 158 109 COLOUR_TEXT_REGION 101 158 109 158 51 STRAND 115 158 119 COLOUR_TEXT_REGION 115 158 119 158 51 STRAND 124 158 125 COLOUR_TEXT_REGION 124 158 125 158 51 STRAND 146 158 150 COLOUR_TEXT_REGION 146 158 150 158 51 STRAND 173 158 176 COLOUR_TEXT_REGION 173 158 176 158 51 STRAND 194 158 197 COLOUR_TEXT_REGION 194 158 197 158 51 HELIX 13 158 20 COLOUR_TEXT_REGION 13 158 20 158 50 HELIX 40 158 48 COLOUR_TEXT_REGION 40 158 48 158 50 HELIX 66 158 73 COLOUR_TEXT_REGION 66 158 73 158 50 HELIX 129 158 138 COLOUR_TEXT_REGION 129 158 138 158 50 HELIX 161 158 167 COLOUR_TEXT_REGION 161 158 167 158 50 HELIX 180 158 190 COLOUR_TEXT_REGION 180 158 190 158 50 HELIX 209 158 212 COLOUR_TEXT_REGION 209 158 212 158 50 HELIX 223 158 228 COLOUR_TEXT_REGION 223 158 228 158 50 STRAND 32 163 37 COLOUR_TEXT_REGION 32 163 37 163 51 STRAND 57 163 58 COLOUR_TEXT_REGION 57 163 58 163 51 STRAND 91 163 95 COLOUR_TEXT_REGION 91 163 95 163 51 STRAND 102 163 109 COLOUR_TEXT_REGION 102 163 109 163 51 STRAND 114 163 119 COLOUR_TEXT_REGION 114 163 119 163 51 STRAND 124 163 125 COLOUR_TEXT_REGION 124 163 125 163 51 STRAND 146 163 150 COLOUR_TEXT_REGION 146 163 150 163 51 STRAND 174 163 175 COLOUR_TEXT_REGION 174 163 175 163 51 STRAND 194 163 197 COLOUR_TEXT_REGION 194 163 197 163 51 HELIX 4 163 8 COLOUR_TEXT_REGION 4 163 8 163 50 HELIX 13 163 20 COLOUR_TEXT_REGION 13 163 20 163 50 HELIX 39 163 47 COLOUR_TEXT_REGION 39 163 47 163 50 HELIX 68 163 72 COLOUR_TEXT_REGION 68 163 72 163 50 HELIX 129 163 138 COLOUR_TEXT_REGION 129 163 138 163 50 HELIX 161 163 166 COLOUR_TEXT_REGION 161 163 166 163 50 HELIX 180 163 190 COLOUR_TEXT_REGION 180 163 190 163 50 HELIX 209 163 213 COLOUR_TEXT_REGION 209 163 213 163 50 HELIX 224 163 228 COLOUR_TEXT_REGION 224 163 228 163 50 STRAND 32 164 35 COLOUR_TEXT_REGION 32 164 35 164 51 STRAND 92 164 94 COLOUR_TEXT_REGION 92 164 94 164 51 STRAND 101 164 109 COLOUR_TEXT_REGION 101 164 109 164 51 STRAND 116 164 119 COLOUR_TEXT_REGION 116 164 119 164 51 STRAND 123 164 125 COLOUR_TEXT_REGION 123 164 125 164 51 STRAND 145 164 150 COLOUR_TEXT_REGION 145 164 150 164 51 STRAND 173 164 176 COLOUR_TEXT_REGION 173 164 176 164 51 STRAND 194 164 197 COLOUR_TEXT_REGION 194 164 197 164 51 HELIX 13 164 20 COLOUR_TEXT_REGION 13 164 20 164 50 HELIX 40 164 50 COLOUR_TEXT_REGION 40 164 50 164 50 HELIX 65 164 74 COLOUR_TEXT_REGION 65 164 74 164 50 HELIX 129 164 138 COLOUR_TEXT_REGION 129 164 138 164 50 HELIX 161 164 167 COLOUR_TEXT_REGION 161 164 167 164 50 HELIX 180 164 190 COLOUR_TEXT_REGION 180 164 190 164 50 HELIX 220 164 228 COLOUR_TEXT_REGION 220 164 228 164 50